Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vivi5g03071 | ATGGAGTGTACACCTGCTAGAAAGACACAGAAAGCTGACCGAGAAAAGTTAAGGAGGGATCGACTCAATGAACAGTTTGTAGAACTTGGTAGCATTTTAGACCCTGATAGACCCAAAAATGATAAAGCAACCATTCTAGGTGATACGGTTCAATTGCTGAAGGACCTTACTTCTCAAGTTAGTAAACTAAAAGATGAATATACTATGCTAAATGAAGAATCTCGTGAGTTGTCTCAGGAGAAAAATGATCTCAGAGAAGAAAAGGCTTCTCTTAAATCAGATATTGAGAATTTGAATAACCAATATCAGCTGCAACTCAGGACTATGTATCCATGGCCTGCAATGGATCATTCAGTAATGATGGCTCCACCATCATATCCGTATCCAGTTCCAATGCCGGTGCCTCCTCCTGGTTCAATTCCCATGCAGCCGTACCCCTACTATGCTAACCAACATCCTGCAATCATCCCTAACCCGTGCTCGACATATGTCCCGTTTTTAGCTCCCAACACAATTGTTGAACAGCAATCCACACAGTACGTATCCCCGCCTCTTCATCCAGGTAGCCGGTCCCACATATCAGGAAAACAAGAATCCAAAAACAAATCATCGAGGGAGAGCAGAGCTGAAAGACATGCAGATTCTAATGATGTCGCCACAGACCTTGAGTTGAAGACTCCTGGGTCTTCTGCAGATCAGGATTTATCATCCGCACAGAAAAAATCCAGCAAGTCTCCTTCAAGGAAGGAAAACAGTTACACAGATGGTAGTTCCTTAGGCAAGTGTTCTTCATCTCACAGTGTTCAGGATAGCTCATCAAGTAGTGTAGTTGGGAGCAGAAAAGCTAGTGAATGA | 855 | 0.4316 | MECTPARKTQKADREKLRRDRLNEQFVELGSILDPDRPKNDKATILGDTVQLLKDLTSQVSKLKDEYTMLNEESRELSQEKNDLREEKASLKSDIENLNNQYQLQLRTMYPWPAMDHSVMMAPPSYPYPVPMPVPPPGSIPMQPYPYYANQHPAIIPNPCSTYVPFLAPNTIVEQQSTQYVSPPLHPGSRSHISGKQESKNKSSRESRAERHADSNDVATDLELKTPGSSADQDLSSAQKKSSKSPSRKENSYTDGSSLGKCSSSHSVQDSSSSSVVGSRKASE | 284 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vivi5g03071 | 284 | Gene3D | - | 6 | 89 | IPR036638 | GO:0046983 | |
Vivi5g03071 | 284 | CDD | bHLH_AtILR3_like | 11 | 85 | - | - | |
Vivi5g03071 | 284 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 6 | 56 | IPR011598 | GO:0046983 | |
Vivi5g03071 | 284 | PANTHER | TRANSCRIPTION FACTOR BHLH121 | 2 | 282 | IPR044579 | GO:0003700|GO:0006879 | |
Vivi5g03071 | 284 | MobiDBLite | consensus disorder prediction | 178 | 284 | - | - | |
Vivi5g03071 | 284 | MobiDBLite | consensus disorder prediction | 222 | 242 | - | - | |
Vivi5g03071 | 284 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 5 | 76 | IPR036638 | GO:0046983 | |
Vivi5g03071 | 284 | MobiDBLite | consensus disorder prediction | 249 | 284 | - | - | |
Vivi5g03071 | 284 | Coils | Coil | 53 | 108 | - | - | |
Vivi5g03071 | 284 | SMART | finulus | 12 | 62 | IPR011598 | GO:0046983 | |
Vivi5g03071 | 284 | MobiDBLite | consensus disorder prediction | 193 | 219 | - | - | |
Vivi5g03071 | 284 | Pfam | Helix-loop-helix DNA-binding domain | 7 | 56 | IPR011598 | GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vivi5g03071 | Vivi-Chr5 | 119226901 | 119229925 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vivi5g03071 | 6 | 234 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT3G19860 | 64.957 | 1.09e-97 | 288 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Vivi5g03071 | HLH | 1.7e-09 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vivi5g03071 | - | - | cam:101491902 | 416.772 |