Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03068 ATGACCATAAGTGAAAATCAATTGTTGAATGATCTCACAAATTCTAAAATCATAGGCGAGAGTAGCAAACAAAAGTTAAATATGAAATCATTGAACCATAAAGAAGGTCCTAATGAAGGAGAAGTTCGTGTGAATAAAAAACGAAGCAGAGATAAGGCTGTGATTAGAAGTGAGAATGATACAAATGGGGGAGGGAAAGATGAAAAGTATCGTGATCCAGATCATGAAATGCATATTTTGACTGAAAGAGAAAGGAGAAAGAAAATGAGTAACATGTTCTCTAGCCTTCATGATTTGCTTCCTGAACTACCTTCTAAGGCTGATAAATCAACAATTGTGGATGGAGCAGTGACACAAATAAAAAATCTACAACAACTTATTGAAAAGTTAGAAAAGGAGAAGCAAGAAAAGCTGAAATATATATCCCTATTTGAAAGTGAGCCATCATCTGTGATAAAAAAATCAAATTGGCGGCCATATGAACCAAGGGAAACAATCAAAGCTGATCAAAGATCCTTAAGTTATAATAATAACTTGCCTACTGCTGCAATTGTACCTTCATATCCTAATTCAAAAGCCTTATCATTATCGGCACCTCCATCACAACAAGTAGCTTTTCAAACATGGACTTCTCCAAATGTCGTCACAAATATATGTGGCGATGAAGTACAATTCTCCATATGCGCTACTAAAAGGTCAGGTCTTTTGACACAAATTTCTTTTGTGTTGGAGAAATATATGATTGATGTTGTATCTGCCAGCATTATGTGCAACAGAAATGGAAATTTCTACATGATTCAAGCACATGCAAGGCAAGGTTCACATGACACAAATTTAATGAAGGAAATTTACCAGCAAGCAGCTAGAGAGATTATGATGTGGATCTCTTAA 891 0.3524 MTISENQLLNDLTNSKIIGESSKQKLNMKSLNHKEGPNEGEVRVNKKRSRDKAVIRSENDTNGGGKDEKYRDPDHEMHILTERERRKKMSNMFSSLHDLLPELPSKADKSTIVDGAVTQIKNLQQLIEKLEKEKQEKLKYISLFESEPSSVIKKSNWRPYEPRETIKADQRSLSYNNNLPTAAIVPSYPNSKALSLSAPPSQQVAFQTWTSPNVVTNICGDEVQFSICATKRSGLLTQISFVLEKYMIDVVSASIMCNRNGNFYMIQAHARQGSHDTNLMKEIYQQAAREIMMWIS 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03068 296 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 142 IPR036638 GO:0046983
Vivi5g03068 296 CDD bHLH_AtbHLH_like 78 127 IPR045239 -
Vivi5g03068 296 Coils Coil 113 147 - -
Vivi5g03068 296 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 123 IPR011598 GO:0046983
Vivi5g03068 296 MobiDBLite consensus disorder prediction 20 72 - -
Vivi5g03068 296 SMART finulus 79 129 IPR011598 GO:0046983
Vivi5g03068 296 MobiDBLite consensus disorder prediction 27 72 - -
Vivi5g03068 296 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 21 295 IPR044278 GO:0003700|GO:0006355|GO:0009960
Vivi5g03068 296 Gene3D - 66 139 IPR036638 GO:0046983
Vivi5g03068 296 Pfam Helix-loop-helix DNA-binding domain 76 124 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03068 Vivi-Chr5 119202963 119204643 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03068 54 296 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 35.496 6.57e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi5g03068 HLH 1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03068 - - psat:127104597 375.555