Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03067 ATGACCATAAGTGAAAATCAATTGTTGAATGATCTCACAAATTCTAAAATCATAGGCGAGAGTAGCAAACAAAAGTTAAATATGAAATCATTGAACCATAAAGAAGGTCCTAATGAAGGAGAAGTTCGTGTGAATAAAAAACGAAGCAGAGATAAGGCTGTGATTAGAAGTGAGAATGATACAAATGGGGGAGGGAAAGATGAAAAGTATCGTGATCCAGATCATGAAATGCATATTTTGACTGAAAGAGAAAGGAGAAAGAAAATGAGTAACATGTTCTCTAGCCTTCATGATTTGCTTCCTGAACTACCTTCTAAGGCTGATAAATTAACAATTGTGGATGGAGCAGTGAAGCAAATTAAAAATCTACAACAAAGTATTGAAAAGTTAGAAAAGAAGAAGCAAGAAAAGCTAAAATATGCTTCCATGTTCAGAAGTGAGTCATCATCTGTGATCAACAAATCACATTGGCATCCCTATGAATCAAGGGAAACAACCAAAGCTGGTCAAGGATCCTCGACTTATAATAATAACTTGCCTACTAGTGCAATTGTAACTTCATATCCTAATTCAAAAGCATTATCACTACCTCCACCACAACAAGTATCTTTTCAAACATGGTCTTCTCCAAATGTTGTCACAAATATATGTGGTGGTGAAGCACTGTTCTCTATATGTGCTACTAAAAGGTCGGGTCTTTTGACAAAGATTGCTTTTGTATTGGAGAAATATATGATTGATGTTGTATCAGTCAGCATTATCTGCAACGCAAATGGAAATTTCTACATGATTCAGGCACATGCAAGACAGGGTTCGCATGACACAAATTCAATGGAGGAAATTTACAAACATGCATCTAGAGAAATTATGATGTGGATCGCTTAA 885 0.3548 MTISENQLLNDLTNSKIIGESSKQKLNMKSLNHKEGPNEGEVRVNKKRSRDKAVIRSENDTNGGGKDEKYRDPDHEMHILTERERRKKMSNMFSSLHDLLPELPSKADKLTIVDGAVKQIKNLQQSIEKLEKKKQEKLKYASMFRSESSSVINKSHWHPYESRETTKAGQGSSTYNNNLPTSAIVTSYPNSKALSLPPPQQVSFQTWSSPNVVTNICGGEALFSICATKRSGLLTKIAFVLEKYMIDVVSVSIICNANGNFYMIQAHARQGSHDTNSMEEIYKHASREIMMWIA 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03067 294 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 123 IPR011598 GO:0046983
Vivi5g03067 294 CDD bHLH_AtbHLH_like 78 127 IPR045239 -
Vivi5g03067 294 Pfam Helix-loop-helix DNA-binding domain 76 124 IPR011598 GO:0046983
Vivi5g03067 294 MobiDBLite consensus disorder prediction 20 72 - -
Vivi5g03067 294 Gene3D - 66 139 IPR036638 GO:0046983
Vivi5g03067 294 MobiDBLite consensus disorder prediction 27 72 - -
Vivi5g03067 294 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 21 293 IPR044278 GO:0003700|GO:0006355|GO:0009960
Vivi5g03067 294 SMART finulus 79 129 IPR011598 GO:0046983
Vivi5g03067 294 Coils Coil 113 140 - -
Vivi5g03067 294 MobiDBLite consensus disorder prediction 155 176 - -
Vivi5g03067 294 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 141 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03067 Vivi-Chr5 119137269 119204643 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03067 54 294 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 36.122 2.19e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi5g03067 HLH 6.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03067 - - psat:127104597 386.341