Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vivi5g03067 | ATGACCATAAGTGAAAATCAATTGTTGAATGATCTCACAAATTCTAAAATCATAGGCGAGAGTAGCAAACAAAAGTTAAATATGAAATCATTGAACCATAAAGAAGGTCCTAATGAAGGAGAAGTTCGTGTGAATAAAAAACGAAGCAGAGATAAGGCTGTGATTAGAAGTGAGAATGATACAAATGGGGGAGGGAAAGATGAAAAGTATCGTGATCCAGATCATGAAATGCATATTTTGACTGAAAGAGAAAGGAGAAAGAAAATGAGTAACATGTTCTCTAGCCTTCATGATTTGCTTCCTGAACTACCTTCTAAGGCTGATAAATTAACAATTGTGGATGGAGCAGTGAAGCAAATTAAAAATCTACAACAAAGTATTGAAAAGTTAGAAAAGAAGAAGCAAGAAAAGCTAAAATATGCTTCCATGTTCAGAAGTGAGTCATCATCTGTGATCAACAAATCACATTGGCATCCCTATGAATCAAGGGAAACAACCAAAGCTGGTCAAGGATCCTCGACTTATAATAATAACTTGCCTACTAGTGCAATTGTAACTTCATATCCTAATTCAAAAGCATTATCACTACCTCCACCACAACAAGTATCTTTTCAAACATGGTCTTCTCCAAATGTTGTCACAAATATATGTGGTGGTGAAGCACTGTTCTCTATATGTGCTACTAAAAGGTCGGGTCTTTTGACAAAGATTGCTTTTGTATTGGAGAAATATATGATTGATGTTGTATCAGTCAGCATTATCTGCAACGCAAATGGAAATTTCTACATGATTCAGGCACATGCAAGACAGGGTTCGCATGACACAAATTCAATGGAGGAAATTTACAAACATGCATCTAGAGAAATTATGATGTGGATCGCTTAA | 885 | 0.3548 | MTISENQLLNDLTNSKIIGESSKQKLNMKSLNHKEGPNEGEVRVNKKRSRDKAVIRSENDTNGGGKDEKYRDPDHEMHILTERERRKKMSNMFSSLHDLLPELPSKADKLTIVDGAVKQIKNLQQSIEKLEKKKQEKLKYASMFRSESSSVINKSHWHPYESRETTKAGQGSSTYNNNLPTSAIVTSYPNSKALSLPPPQQVSFQTWSSPNVVTNICGGEALFSICATKRSGLLTKIAFVLEKYMIDVVSVSIICNANGNFYMIQAHARQGSHDTNSMEEIYKHASREIMMWIA | 294 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vivi5g03067 | 294 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 73 | 123 | IPR011598 | GO:0046983 | |
Vivi5g03067 | 294 | CDD | bHLH_AtbHLH_like | 78 | 127 | IPR045239 | - | |
Vivi5g03067 | 294 | Pfam | Helix-loop-helix DNA-binding domain | 76 | 124 | IPR011598 | GO:0046983 | |
Vivi5g03067 | 294 | MobiDBLite | consensus disorder prediction | 20 | 72 | - | - | |
Vivi5g03067 | 294 | Gene3D | - | 66 | 139 | IPR036638 | GO:0046983 | |
Vivi5g03067 | 294 | MobiDBLite | consensus disorder prediction | 27 | 72 | - | - | |
Vivi5g03067 | 294 | PANTHER | BHLH DOMAIN-CONTAINING PROTEIN | 21 | 293 | IPR044278 | GO:0003700|GO:0006355|GO:0009960 | |
Vivi5g03067 | 294 | SMART | finulus | 79 | 129 | IPR011598 | GO:0046983 | |
Vivi5g03067 | 294 | Coils | Coil | 113 | 140 | - | - | |
Vivi5g03067 | 294 | MobiDBLite | consensus disorder prediction | 155 | 176 | - | - | |
Vivi5g03067 | 294 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 75 | 141 | IPR036638 | GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vivi5g03067 | Vivi-Chr5 | 119137269 | 119204643 | Dispersed/Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vivi5g03067 | 54 | 294 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT1G49770 | 36.122 | 2.19e-44 | 151 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Vivi5g03067 | HLH | 6.8e-09 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vivi5g03067 | - | - | psat:127104597 | 386.341 |