Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03056 ATGGGTTTGAGTTCAATTATTGTTGTTGTTTTTGTGATTGTTTGTATGAGCAAAGAAGGTTTAGGTGTGAGAGAACAAGAAGAGGATAGAGTTTATGAATTACCAGGACAACCTTTGGTGAATTTCAAACAATATTCAGGTTATATAACAGTGAATGAAAGTCATGGAAGAGCACTGTTTTATTGGTTCTTTGAAGCTGTTGATCAACCTCAACAAAAACCTCTTCTTCTTTGGCTTAATGGAGGCCCTGGTTGTTCTTCAATTGGTTATGGAGAAGCAGAGGAGCTTGGACCCTTTTCTCCCCAAAATAGCACCCAACCTAAACTCAAATTAAACCCTTATTCTTGGAATAAAGCTGCAAATCTTTTGTTTCTTGAATCTCCTGTTGGAGTTGGATTTTCCTACACCAACACCACCACCGATATTAGTCAACTTGGTGACACCATTACTGCTAAGGATTCACACACTTTCCTCATCAATTGGTTTAAAAGATTTCCTCAATTCAAATCACATGATTTTTACATTGCTGGTGAAAGCTATGCAGGACATTATGTTCCACAACTTGCTGAACGCATTTTGGATAATAATAATCAGAACTCTTCCTATGAAGATTACATTAACTTCAAAGGAATCATGATTGGGAATGCATTATTGGATGATGAAACAGATCAAAAGGGTATGATAGAATATGCATGGGATCATGCCGTTATATCAGATGGTTTATACGAAAACATCACAACCATATGCAATTTCAGCTATCCGATTCAAAATCAAACCGATGCATGCAATAACGAACTTAACAAATATTTTGACGTGTATAAAATTGTCGATATGTATAGTTTGTATGCTCCAAGATGTTTCAGCAATACCAGTAACACAAGAAGATCCTCTGACGGGTGGAATAAAATGCGAGCCGGATATGATCCATGTGCATCAGATTATACTGAAATTTATCTAAATAGGCCAGAAGTTCAACAGGCACTGCATGCAAATGTGACTAAGATTTCATATCCATGGACTCACTGCAGTAACAATATATCATTTTGGAACGATTCACCGGTGTCCATGCTTCCTGTCCTCAAGAAGCTTATTGCTGGCGGTCTTCGCGTATGGATTTACAGTGGAGACACTGATGGAAGAATTCCCGTAACTGCAACAAGATATACATTGAGAAAATTGGGACTTCCTGTAGTTCAAGATTGGACTCCTTGGTATACTAGTAGACAGGTGGGAGGATGGAGCATTGTTTATGATGGGATAACATTTGTGACCATAAGAGGAGCTGGTCATCAAGTTCCTACTTTTGCTCCCAAGCAAGCTCTTCAGCTAGTTCGACATTTTTTAGTCAATAAGAATTTACCACAGCATCCTATTTAA 1377 0.3798 MGLSSIIVVVFVIVCMSKEGLGVREQEEDRVYELPGQPLVNFKQYSGYITVNESHGRALFYWFFEAVDQPQQKPLLLWLNGGPGCSSIGYGEAEELGPFSPQNSTQPKLKLNPYSWNKAANLLFLESPVGVGFSYTNTTTDISQLGDTITAKDSHTFLINWFKRFPQFKSHDFYIAGESYAGHYVPQLAERILDNNNQNSSYEDYINFKGIMIGNALLDDETDQKGMIEYAWDHAVISDGLYENITTICNFSYPIQNQTDACNNELNKYFDVYKIVDMYSLYAPRCFSNTSNTRRSSDGWNKMRAGYDPCASDYTEIYLNRPEVQQALHANVTKISYPWTHCSNNISFWNDSPVSMLPVLKKLIAGGLRVWIYSGDTDGRIPVTATRYTLRKLGLPVVQDWTPWYTSRQVGGWSIVYDGITFVTIRGAGHQVPTFAPKQALQLVRHFLVNKNLPQHPI 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03056 458 Pfam Serine carboxypeptidase 36 449 IPR001563 GO:0004185|GO:0006508
Vivi5g03056 458 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 30 437 IPR001563 GO:0004185|GO:0006508
Vivi5g03056 458 FunFam Carboxypeptidase 306 453 - -
Vivi5g03056 458 FunFam Carboxypeptidase 25 288 - -
Vivi5g03056 458 ProSitePatterns Serine carboxypeptidases, histidine active site. 420 437 IPR033124 GO:0004185
Vivi5g03056 458 Gene3D - 310 347 - -
Vivi5g03056 458 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 186 IPR001563 GO:0004185|GO:0006508
Vivi5g03056 458 PRINTS Carboxypeptidase C serine protease (S10) family signature 112 124 IPR001563 GO:0004185|GO:0006508
Vivi5g03056 458 PRINTS Carboxypeptidase C serine protease (S10) family signature 125 135 IPR001563 GO:0004185|GO:0006508
Vivi5g03056 458 PRINTS Carboxypeptidase C serine protease (S10) family signature 420 433 IPR001563 GO:0004185|GO:0006508
Vivi5g03056 458 SUPERFAMILY alpha/beta-Hydrolases 27 455 IPR029058 -
Vivi5g03056 458 Gene3D alpha/beta hydrolase 25 288 IPR029058 -
Vivi5g03056 458 ProSitePatterns Serine carboxypeptidases, serine active site. 175 182 IPR018202 GO:0004185
Vivi5g03056 458 FunFam Carboxypeptidase 356 450 - -
Vivi5g03056 458 Gene3D - 356 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03056 Vivi-Chr5 118942352 118947858 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03056 318 453 Calmodulin-binding Proteins AT2G22960 29.927 9.21e-17 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03056 K16297 - gmx:100781503 781.941