Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03039 ATGACAACATTAACTGACTTCCCCAACATTGAAGACGAAGAAGGCGAATTATTAACTAGCCTTGAAACTTTAGAACAACCTCGTTTCACAGTTTTGAGTGAGTCTCATATAAAGTGTCTTCAAGATGATGAAATCAAAGAAGCCATGTTGGTTCTCACCATATCAAGACCTGTTGCATGCCTTCTACTCACTTACTACAAATGGAACTTGAGCGATGTTTGTGAATCATGGTTAGATAACCATGAAAAAGTTCTAAAAACCATAGGGTTATCAGAAGAACCGGGAAAAGTAGAATTAGGGTTTCCAAATTCAGAATGTAATATCTGTTTTGAAACCTTTTCTAATGATGAGATTAGGTCATCATGGTGTGGTCATCCGTTTTGCATTGATTGTTGGAATCAGTATATTGATACAAATATCAACAATCACAACTGCTTCAAACTCAAATGCCCTCAACCTTCTTGTGATGCAGCTATAGATGAAGACATGATTCAACAATTAGCAAGTGAGTCTAGAAAGCTTCAATATGATTATTTTTTGCTTAGGTCTTATGTGGAAAACAACAATGATAAGGAATTGAAGTGGTGTCCTGCTCCAAATTGTTGTTATGCTATAAGTTATGAAACACTGTTTCATGATTCTAGTAGTTCTAGGTCTAGAATGAATTATGATGTTACATGCTTTTGTTGTCATGTTTTTTGTTGGAATTGTGGGGAAGAAGCTCATACACCTGTGGATTGTGAAACTGTTGCTAAATGGATGAAAAAGACTAGTTCTGAAATTAAACTCACTACTAGTGGTTGGATTGTGGCTAACACAAAACCATGCCCTAATTGTAAGATTCCCATTCAGAAAAACAAAGGGTGTAATCATATGATATGCAAATGTGACTTCGATTTTTGCTGGTTTTGTCTCCAAGGTCGATGTATATGTTATGCAACACAACTCGAACAAGTTCAGGTATTTGAAGATGTAAAACCTAATAACCACGCGAAAAATCAACTGGACAGGTATAGTTACTACCATCAAGGTTGGGCTAACAATGAAATTTCAAGAAAAAGGGCTCTTCAAAACTTGAATAAGATGAAGATGAGTAAATCATTGTATACGAGTAAGTATGGAACTTATTTAGAATTATTGTATACATTGAAACTCGTGGTTGAACTTCGAGGAATTCTCAAATGGAGTTATGTATATGGATACTATCTCCCTGAGGATGAAAGTGCTAAGATTGAGGTTTTTGATCACATCCAAGGAATAGCTCAAGTTATTTTGGATAAGCTTCATCAATGTGCTGATATTGGGTTCAGAAGGCTGGTGCAAAAACATGATACAGAAGATGAAAAGTTTCGACTGAATCTAGTATCTCTAACTGGGGTGACTGAAAGATATTTCATGAATTGGGTTAAAGATTTAGAGAATAGTCTTGATGTTGTGCGTGTGAAAAACTATACTGGTTGA 1461 0.3552 MTTLTDFPNIEDEEGELLTSLETLEQPRFTVLSESHIKCLQDDEIKEAMLVLTISRPVACLLLTYYKWNLSDVCESWLDNHEKVLKTIGLSEEPGKVELGFPNSECNICFETFSNDEIRSSWCGHPFCIDCWNQYIDTNINNHNCFKLKCPQPSCDAAIDEDMIQQLASESRKLQYDYFLLRSYVENNNDKELKWCPAPNCCYAISYETLFHDSSSSRSRMNYDVTCFCCHVFCWNCGEEAHTPVDCETVAKWMKKTSSEIKLTTSGWIVANTKPCPNCKIPIQKNKGCNHMICKCDFDFCWFCLQGRCICYATQLEQVQVFEDVKPNNHAKNQLDRYSYYHQGWANNEISRKRALQNLNKMKMSKSLYTSKYGTYLELLYTLKLVVELRGILKWSYVYGYYLPEDESAKIEVFDHIQGIAQVILDKLHQCADIGFRRLVQKHDTEDEKFRLNLVSLTGVTERYFMNWVKDLENSLDVVRVKNYTG 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03039 486 Pfam IBR domain, a half RING-finger domain 175 247 IPR002867 GO:0008270
Vivi5g03039 486 Pfam IBR domain, a half RING-finger domain 271 306 IPR002867 GO:0008270
Vivi5g03039 486 SUPERFAMILY RING/U-box 268 306 - -
Vivi5g03039 486 SUPERFAMILY RING/U-box 183 254 - -
Vivi5g03039 486 SMART ibrneu5 174 247 IPR002867 GO:0008270
Vivi5g03039 486 SMART ibrneu5 262 311 IPR002867 GO:0008270
Vivi5g03039 486 FunFam RBR-type E3 ubiquitin transferase 101 188 - -
Vivi5g03039 486 ProSiteProfiles Zinc finger RING-type profile. 106 151 IPR001841 -
Vivi5g03039 486 ProSiteProfiles TRIAD supradomain profile. 102 346 IPR044066 -
Vivi5g03039 486 CDD BRcat_RBR_ANKIB1 181 256 - -
Vivi5g03039 486 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 187 IPR013083 -
Vivi5g03039 486 Gene3D - 243 477 - -
Vivi5g03039 486 ProSiteProfiles Zinc finger CCHC-type profile. 234 247 IPR001878 GO:0003676|GO:0008270
Vivi5g03039 486 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 66 363 IPR031127 GO:0004842|GO:0016567
Vivi5g03039 486 SUPERFAMILY RING/U-box 104 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03039 Vivi-Chr5 118704869 118706329 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03039 26 479 ARIADNE family AT1G65430 41.962 1.02e-119 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03039 K11968 - vvo:131638564 1018.84