Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03030 ATGGGCAAGTCAAGCAAGAAATCCGCCACCAAGGTTGATGCTGCTCCCGTTGTCGTTTCACCAGTCAAGTCTGGAAAGAAAGGCAAGAGGCAGGCTGAGGAAGAAGTTAAGAAAGTGAGTGCTAAGAAGCAAAAGGTCGAGGAGGTTGTTGCCAAGCAAAAGAAGGAAGCTTTGATTCAGAAAGCTAAGGAGGAAAGCAGTTCAGAGGAAGAAACATCTGAATCTGAGGATGAGAAACCTGCTGTGAAAGCTGCTGCTCCTGTCAAGAAGGCACCGGCTAAGAATGGGAATGCTAAGAAAGCCAAGCCAGAGTCCAGTTCTTCAGACTCTGGGTCTGATGAGGAAGACACCTCAGATGAGGAGGATGAGAGTGCAAAGAAGCCGGCACCAAAGAAAGCTGAGGTTGCTGTTAAACCTAAGCAGGCACCAAAGAAAGAGGAAAGTTCTGAGGAATCAGATGAGGACTCTGAGGAAGGTTCCTCTGAAGACGAGAAACCTGCACCAAAATCTGTCCCTGCTAAAAATGGGAGTGCCCCAGCAAAGAAAGCTGCTAGTTCTTCTGATGAGGAATCTGAAGAAGATTCTTCTTCTGATGAAGAAGCACCAAAAGCTAAGGCTGCCCCTGCTGCTGTGAAGCCTGCTGCTGCAAAGAAGCCAGACTCTGATAGCTCAGATGAGTCTGATTCTGATGATGATGAGGATACCAAGCCTGCTGTGAAGCCTGCTGTTGCCAAGAAGGCCGAGGATGATGATGAAGATAGCAGTGAAGATGATGATAGCAGCTCTGATGAAGACAATAAAACATCCAAAGCTTCTAATGGAAACAAGAAGCCAGTGACTGTCTCTAAGAAAGAGGACAAGATGAATGTTGACAAGGATAGCAGTGATAGTTCTGAGGAAAGTGACAGCGATGAGGAGAGCGAGGAAGAACCGTCCAAAACACCTCAGACAAAGACTAAGGATGTGGAGATGATTGATGCTGACAAATCTTCAAAGAAAGCCCCTGCTACCCCAGCTACACCAAATGAGAGTGGAGGTTCAAAGACCTTATTTGTTGGAAATCTGTCATTCAAAGTCGAGCAAGCTGACATTGTAAATTTCTTTCAAGAATGCGGAGAAGTTGTTGATGTCCGTCTTGCTTCGGATGAGGATGGAAGATTTAAAGGCTTTGGACATGTTGAGTTTGCGACTGCAGAGGCAGCTCAAAGTGCACTTGAGTTGAATGGACAAGAATTATTGCAAAGAGCTGTCCGACTTGATTTAGCTCGGGAAAGGGGAGCCTACACTCCAAATAGTAACAGCAACTTCTCTGCTGGTGGTAGAGGCCCGTCCCAAACTGTATTTGTCAGGGGTTTTGATAAATCTCTTGGGGAGGATGAGATCAGAGCTAAATTGGAGCAACATTTTGCTTCTTGCGGGCAGGCTTCAAGAGTGTCAATCCCAAAAGATTATGATTCTGGCTATGTGAAGGGGTTTGCATACATGGACTTCAAAGATTCAGATAGCTTTAACAAAGCTCTAGAACTCCATGAAAGCGAACTTGATGGTTACTCTTTGTCAGTGGATGAAGCCAAACCTAGAGATAGTCAAGGTCCACCAAGCGGCGGTGGAGGTCGTTTTAGCGACAGGGGTCGTGGTAGAGGTCGTGGTCGGAACTCTGGAGGTCGGTTTGACAGGAATGGCTCTGGAGGTCGGTTCCCTGGAAGGGATGGCGGCGGTAGAAGGGGTCGTGGTCGTTCTGTATTCAATAAACCAAGCATTGCTTCAGAAGGAAAAAAGACTACTTTTGCCGACGACTAG 1800 0.4672 MGKSSKKSATKVDAAPVVVSPVKSGKKGKRQAEEEVKKVSAKKQKVEEVVAKQKKEALIQKAKEESSSEEETSESEDEKPAVKAAAPVKKAPAKNGNAKKAKPESSSSDSGSDEEDTSDEEDESAKKPAPKKAEVAVKPKQAPKKEESSEESDEDSEEGSSEDEKPAPKSVPAKNGSAPAKKAASSSDEESEEDSSSDEEAPKAKAAPAAVKPAAAKKPDSDSSDESDSDDDEDTKPAVKPAVAKKAEDDDEDSSEDDDSSSDEDNKTSKASNGNKKPVTVSKKEDKMNVDKDSSDSSEESDSDEESEEEPSKTPQTKTKDVEMIDADKSSKKAPATPATPNESGGSKTLFVGNLSFKVEQADIVNFFQECGEVVDVRLASDEDGRFKGFGHVEFATAEAAQSALELNGQELLQRAVRLDLARERGAYTPNSNSNFSAGGRGPSQTVFVRGFDKSLGEDEIRAKLEQHFASCGQASRVSIPKDYDSGYVKGFAYMDFKDSDSFNKALELHESELDGYSLSVDEAKPRDSQGPPSGGGGRFSDRGRGRGRGRNSGGRFDRNGSGGRFPGRDGGGRRGRGRSVFNKPSIASEGKKTTFADD 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03030 599 Gene3D - 437 584 IPR012677 -
Vivi5g03030 599 CDD RRM1_NUCLs 349 425 IPR034349 -
Vivi5g03030 599 MobiDBLite consensus disorder prediction 279 296 - -
Vivi5g03030 599 MobiDBLite consensus disorder prediction 1 347 - -
Vivi5g03030 599 MobiDBLite consensus disorder prediction 122 149 - -
Vivi5g03030 599 MobiDBLite consensus disorder prediction 233 249 - -
Vivi5g03030 599 MobiDBLite consensus disorder prediction 310 330 - -
Vivi5g03030 599 Coils Coil 29 79 - -
Vivi5g03030 599 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 120 490 - -
Vivi5g03030 599 SMART rrm1_1 349 420 IPR000504 GO:0003723
Vivi5g03030 599 SMART rrm1_1 446 522 IPR000504 GO:0003723
Vivi5g03030 599 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 348 424 IPR000504 GO:0003723
Vivi5g03030 599 SUPERFAMILY RNA-binding domain, RBD 443 555 IPR035979 GO:0003676
Vivi5g03030 599 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 445 526 IPR000504 GO:0003723
Vivi5g03030 599 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 447 519 IPR000504 GO:0003723
Vivi5g03030 599 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 350 417 IPR000504 GO:0003723
Vivi5g03030 599 Gene3D - 280 435 IPR012677 -
Vivi5g03030 599 MobiDBLite consensus disorder prediction 521 599 - -
Vivi5g03030 599 MobiDBLite consensus disorder prediction 26 68 - -
Vivi5g03030 599 SUPERFAMILY RNA-binding domain, RBD 340 443 IPR035979 GO:0003676
Vivi5g03030 599 FunFam Nucleolin 2 323 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03030 Vivi-Chr5 118527665 118531780 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03030 346 519 Eukaryotic Initiation Factors Gene Family AT1G22760 26.923 4.55e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03030 K11294 - qsa:O6P43_026102 335.109