LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi5g03028	ATGTACTTGAGGAGAATACAGTGCCGAGATCGGAGATGGGCTTTGTTGTTGCAACCGTCAAAATACTTTTTTAGGCCGAAAGTCTCCGACCATCATTGCTTTCAGTCTTTATCACCTAAGACCACCGTGAGAGAATATTCTTCACTTGGTGGTATTATAAAAAAAAATCTCTTAGGTTCAGATTCATGTAGTCATGTTTCATCTAGATATAGTTTTACCGGTCTGAACAAAAGGCCTAGTTTTTGTCTTAGGAGTACTCAGATACGAGGTTTTAGTTCGGAAAGTGATGGAAGTAGTGCAAGTGAGAATAAACAAGTACATGTTAACGATGGAGGTGATTTGGATAAGGGGAAGAATCAGCTAGGTAAGGCTGGTGGAGATGTTAAATGCTGCAATACACATGCACAGCTTGGAGAACAGGATCAGGAGGAATGGCTTCTTAATGAGAAGCTTGCTGTAGAAAGTAAAAGGAGAGAATCGCCATTTTTGACGAGAAGAGATAAGTTTAAAAATGAGTTTCTGAGAAGAATTACTCCATGGGAGAATATAAACATTTCGTGGGACACATTTCCTTATCACATAAATGAGCATACGAAAAGTCTTCTTACGGAATGTGCTGCTTCCCGTTTGAGACATAATAAGCTTGCTTCGTCTTTTGGCACCCGCCTTGCATCTTCAAGTGGAAGAATATTGCTTCAAAGCATTCCGGGCACTGAGCTCTATCGGGAAAGATTAGTTAGAGCTCTTGCACAAGATTTACAAGTACCGTTGTTGGTGCTTGACAGCAGCATCCTTGCTCCTTATGATATTGATGATGATCAATCGTCAGACTATGAGTCTGATGATGATAATGCAGAATCTGGGGATGAGGGTGGTCTAGAATGTGAGAATGAGGATGATAATGATGCTAGTAATGAAGAAGAATGGACTAGCAGTGCTGAAGCGAAGTCAGATGCAAGCGATAATGAAGATGCACTAGCATCTGCTGAAGCAGCTCTTAAGAAAGTTAAAGCTGCTGTTCAGAAACTTATCCCTTACAATGTTGATGAATTTGAGAAGATGGTGACTGGAGATGAGAGTCCCGAGTCATCGAATTCTGATGATACCAAGTCAACTGATAAATCTGGATCTCAGCTAAGAAAAGGTGACCGCGTGAAGTACATCGGCCCTTCTATTAAATTTACAAATGATGATAGGGTTTCAATTTTAAATAATGGTCAAAGGGGAGAGGTATACGATGTTAATGGAGATCAAGCTGCGGTTATCTTAGATGATAATGTAGAGAAGGCCAATGAGAATGAGGTTGAGAACCCTAACAATGATCGTCCAAAAGCATCAGTTTATTGGATAAATGTTAAGGACATTGAGAACGATCTTGATGCTCAAACACAGGATTGCTACATAGCAGTGGAGGCTTTATGTGAGGTTTTGAATTCCAAACAACCTCTTATAGTATATTTTCCGGATAGTTCACAGTGGTTGCATAAATCACTTCCTAAGTCAAGCCGAAATGAGTTTTTTCAAAAGGTTGAAGAGATGTTTGACCGGTTATCTGGCCCTGTAGTATTGATTTGTGGGCAAAACAAAGTTCATTCTGGAACAAAGGAGAAAGAAAAATTTACGATGATACTCCCAAACATTGGACGTGTTGCTAAGCTGCCTCTTTCTTTGAAGCACCTGACTGATGGATTTAAAGGGGGAAAGACATCTGAAGAGGATGACATTAACAAGCTTTTCTCTAATGTTTTGAGTGTACATCCACCTAAGGAGGAGAATCTACAGGTAGTATTCAAAAAACAACTCGAGGAAGACAGGAAAATTGTGATTTCACGTAGTAATTTGAATGAACTACGAAAGGTTCTTGAAGAACACCAGCTATCATGCGTTGACCTCTTGCAAGCGAATACTGATGGCATCATTTTAACAAAGCAGAAAGCTGAGAAAGTGGTAGGCTGGGCAAAAAACCATTACTTGTCATCATGCTTGCTTCCTTCTGTTAAAGGAGAAAGATTGTGCATACCACGCGAAAGTCTTGAAATTGCAATCTCAAGGATGAAAGACATGGAAACTATGTCACGAAAACCTTCTCAGAACCTCAAGAGCCTTGCAAAGGATGAGTTTGAGAGCAATTTCGTTTCATCTGTTGTACCTCCTGGTGAAATTGGGGTGAAGTTTGATGACATAGGTGCTCTTGAAGATGTTAAGAAGGCACTTCAGGAACTTGTTATTCTTCCAATGAGAAGGCCCGAGCTTTTCACTCGTGGAAACCTGTTGCGGCCCTGCAAAGGAATATTGCTTTTTGGTCCTCCTGGAACTGGGAAAACTCTTCTGGCCAAGGCACTTGCAACAGAAGCCGGTGCAAATTTTATCAGCATAACTGGTTCGACCCTTACTTCAAAGTGGTTTGGAGATGCTGAGAAACTAACCAAAGCACTTTTCTCATTTGCCAGCAAGCTTGCACCTGTCATTATATTTGTTGATGAGGTTGACAGTTTGCTTGGTGCTCGAGGTGGTGCTTTTGAGCATGAGGCCACTAGAAGAATGAGGAATGAGTTCATGGCAGCATGGGATGGATTGAGGTCCAAAGAGAATCAAAGAATCCTCATTCTTGGTGCAACAAACAGGCCATTTGACCTTGATGATGCTGTTATCCGTCGTTTACCAAGAAGGATCTATGTTGATTTACCTGATGCTGAAAACCGAAAGAAGATTCTAAGAATATTTCTTGCAAAAGAAAATCTGTACTCCGATTTTCAATACGACGAACTTGCTAACTTGACCGAAGGATACTCTGGCAGTGATTTGAAGAACCTGTGTGTTGCTGCAGCATATAGACCTGTTCAAGAGCTCTTAGAAGAAGAAAGGAAGCGAGACAATGATACTACAAATTCAGTATTAAGGCCTCTTAATTTGGAAGATTTTGTGCAAGCAAAATCCAAGGTTGGTCCATCTGTTGCGTATGACGCAACAAGCATGAATGAGTTGAGGAAGTGGAACGAAATGTACGGCGAAGGCGGAAGTAGAGCGAAATCACCATTTGGATTTGGGAGCTGA	3054	0.4096	MYLRRIQCRDRRWALLLQPSKYFFRPKVSDHHCFQSLSPKTTVREYSSLGGIIKKNLLGSDSCSHVSSRYSFTGLNKRPSFCLRSTQIRGFSSESDGSSASENKQVHVNDGGDLDKGKNQLGKAGGDVKCCNTHAQLGEQDQEEWLLNEKLAVESKRRESPFLTRRDKFKNEFLRRITPWENINISWDTFPYHINEHTKSLLTECAASRLRHNKLASSFGTRLASSSGRILLQSIPGTELYRERLVRALAQDLQVPLLVLDSSILAPYDIDDDQSSDYESDDDNAESGDEGGLECENEDDNDASNEEEWTSSAEAKSDASDNEDALASAEAALKKVKAAVQKLIPYNVDEFEKMVTGDESPESSNSDDTKSTDKSGSQLRKGDRVKYIGPSIKFTNDDRVSILNNGQRGEVYDVNGDQAAVILDDNVEKANENEVENPNNDRPKASVYWINVKDIENDLDAQTQDCYIAVEALCEVLNSKQPLIVYFPDSSQWLHKSLPKSSRNEFFQKVEEMFDRLSGPVVLICGQNKVHSGTKEKEKFTMILPNIGRVAKLPLSLKHLTDGFKGGKTSEEDDINKLFSNVLSVHPPKEENLQVVFKKQLEEDRKIVISRSNLNELRKVLEEHQLSCVDLLQANTDGIILTKQKAEKVVGWAKNHYLSSCLLPSVKGERLCIPRESLEIAISRMKDMETMSRKPSQNLKSLAKDEFESNFVSSVVPPGEIGVKFDDIGALEDVKKALQELVILPMRRPELFTRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRKKILRIFLAKENLYSDFQYDELANLTEGYSGSDLKNLCVAAAYRPVQELLEEERKRDNDTTNSVLRPLNLEDFVQAKSKVGPSVAYDATSMNELRKWNEMYGEGGSRAKSPFGFGS	1017

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi5g03028	1017	MobiDBLite	consensus disorder prediction	270	323	-	-
	Vivi5g03028	1017	Pfam	AAA+ lid domain	917	953	IPR041569	-
	Vivi5g03028	1017	FunFam	p-loop nucleoside triphosphate hydrolase superfamily protein	722	898	-	-
	Vivi5g03028	1017	MobiDBLite	consensus disorder prediction	272	307	-	-
	Vivi5g03028	1017	MobiDBLite	consensus disorder prediction	355	381	-	-
	Vivi5g03028	1017	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	723	988	IPR027417	-
	Vivi5g03028	1017	SMART	AAA_5	760	897	IPR003593	GO:0016887
	Vivi5g03028	1017	ProSitePatterns	AAA-protein family signature.	867	886	IPR003960	GO:0005524\|GO:0016887
	Vivi5g03028	1017	MobiDBLite	consensus disorder prediction	309	323	-	-
	Vivi5g03028	1017	PANTHER	AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED	168	1010	-	-
	Vivi5g03028	1017	Gene3D	-	896	981	-	-
	Vivi5g03028	1017	Pfam	ATPase family associated with various cellular activities (AAA)	764	894	IPR003959	GO:0005524\|GO:0016887
	Vivi5g03028	1017	Coils	Coil	614	634	-	-
	Vivi5g03028	1017	MobiDBLite	consensus disorder prediction	92	119	-	-
	Vivi5g03028	1017	MobiDBLite	consensus disorder prediction	355	382	-	-
	Vivi5g03028	1017	Gene3D	-	723	999	IPR027417	-
	Vivi5g03028	1017	MobiDBLite	consensus disorder prediction	92	106	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi5g03028	Vivi-Chr5	118508909	118522265	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi5g03028	758	959	Calmodulin-binding Proteins	AT3G56690	35.749	7.10e-33	135

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi5g03028	-		-	gmx:100812718	1595.48