Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03010 ATGCAGATAAACTTGCATTGCATTGCACCCTTTGAGATTATACAATTGCCAAAAATGATTTTGGATAAGAAAGACATTGTGGAAACTCATTATGAGGTTCTCGATGTCAAGGAGGATGCAAATTACGAAGAAATTCACGGTAGTTACCGAATTGCTGCACTTAGTTTACATCCTGATAAACTGTTGAACACGTCTGATTCATCAAGCAGTGATCAAACAAGTGCAGAGAGATTTCTCACAGTACATAAAGCATGGGAAATTCTAAGCAATTCAATTTCTCGTTTATTATACGACAAGAAGCTGCAAAGTTCAAGGCGGGAGGATTTATTGGCTTCTGAGGTTGCTGAAGAGTTAAGCTTACATGATATGACAGCTGAAGATACTGGTGAAGCATTGGAACTGTTTTATCAATGTCGATGTGGTGATTACTTCTCTGTGGATTCGTTGGAGTTGCAGAAAATGGGGTATTTCTTGTTGAGAGATGGAAGCAGTGTGTCTATATGTAATGCTGATGCTTTACCGGGATCGGTGATTCTTCCTTGTGGATCGTGTTCGTTGAAAGCTCGGCTTGTGCTCGGTATAAATGATAGTTGA 594 0.3956 MQINLHCIAPFEIIQLPKMILDKKDIVETHYEVLDVKEDANYEEIHGSYRIAALSLHPDKLLNTSDSSSSDQTSAERFLTVHKAWEILSNSISRLLYDKKLQSSRREDLLASEVAEELSLHDMTAEDTGEALELFYQCRCGDYFSVDSLELQKMGYFLLRDGSSVSICNADALPGSVILPCGSCSLKARLVLGINDS 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03010 197 ProSiteProfiles dnaJ domain profile. 29 101 IPR001623 -
Vivi5g03010 197 FunFam DNAJ heat shock N-terminal domain-containing protein-like 108 196 - -
Vivi5g03010 197 SUPERFAMILY Chaperone J-domain 28 101 IPR036869 -
Vivi5g03010 197 PRINTS DnaJ domain signature 73 93 IPR001623 -
Vivi5g03010 197 PRINTS DnaJ domain signature 31 49 IPR001623 -
Vivi5g03010 197 PRINTS DnaJ domain signature 49 64 IPR001623 -
Vivi5g03010 197 CDD DnaJ 29 90 IPR001623 -
Vivi5g03010 197 Gene3D DnaJ domain 17 106 IPR036869 -
Vivi5g03010 197 Pfam CSL zinc finger 116 191 IPR007872 -
Vivi5g03010 197 PANTHER DPH3 HOMOLOG-RELATED 29 191 IPR044248 GO:0017183|GO:0046872
Vivi5g03010 197 Pfam DnaJ domain 29 98 IPR001623 -
Vivi5g03010 197 Gene3D DPH Zinc finger 108 197 IPR036671 -
Vivi5g03010 197 SUPERFAMILY CSL zinc finger 114 194 IPR036671 -
Vivi5g03010 197 SMART dnaj_3 28 93 IPR001623 -
Vivi5g03010 197 ProSiteProfiles DPH-type metal-binding (MB) domain profile. 114 193 IPR007872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03010 Vivi-Chr5 118320924 118322594 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03010 30 111 C2H2 Transcription Factor Family AT1G74250 37.805 3.13e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03010 K17867 - gmx:100814856 245.358