Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02982 ATGAGCTCTCGGACGAGCAGCAGGCAGACTGCTGTCAGAAGTTACCGGCGGAGGAAGGCAGTTTTAGACCTTGACCTTAACCGAGTGCCGGCTGGTGAGAATCGTGAGCAGGAAGGACCTTCAACTCAGTTGGAGCCTCAAGTATTAGAAACTCAAGCCAACAACCAGCAACAACAACCTCCGTTGATTGATGTGGAGGCCATTGATGATGATGTTATTGAATCTTCCCCTAGGGCCTTTGCTGAGGCTAAAAACAATTCTAGAAGAAATCGCTCCAGGACTATAGTTGATGTGGATTTAGTAGAAGAGCAGAACAGGGTAAACAACAATAATCGCAACAAGCGCAGAAGAGAACCTCCAAATCAAACCATTATCAATTGTGATCTCTATATTAATTTGGAAGGCAGTAGCAGCTCTCCGGTGGAAAGTGTCAAGAAGCTACCCGAGCCTCCAAAAGAACCTGTCTTCAATTGTCCTATATGCATGGGCCCTTTGGTTGAAGAAATGTCAACAAGGTGTGGTCATATTTTTTGCAAGGCATGTATCAAGTCTGCAATAAGTGCTCAGGCTAAATGTCCTACCTGTAGAAAAAAAATTACCGTGAAAGAGCTTATAAGGGTGTTTCTCCCATCAACTGGTTAA 642 0.4439 MSSRTSSRQTAVRSYRRRKAVLDLDLNRVPAGENREQEGPSTQLEPQVLETQANNQQQQPPLIDVEAIDDDVIESSPRAFAEAKNNSRRNRSRTIVDVDLVEEQNRVNNNNRNKRRREPPNQTIINCDLYINLEGSSSSPVESVKKLPEPPKEPVFNCPICMGPLVEEMSTRCGHIFCKACIKSAISAQAKCPTCRKKITVKELIRVFLPSTG 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02982 213 Pfam Zinc finger, C3HC4 type (RING finger) 157 195 - -
Vivi5g02982 213 PANTHER ELFLESS, ISOFORM B 1 212 - -
Vivi5g02982 213 SMART ring_2 158 195 IPR001841 -
Vivi5g02982 213 MobiDBLite consensus disorder prediction 25 45 - -
Vivi5g02982 213 SUPERFAMILY RING/U-box 157 202 - -
Vivi5g02982 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 211 IPR013083 -
Vivi5g02982 213 ProSitePatterns Zinc finger RING-type signature. 173 182 IPR017907 -
Vivi5g02982 213 ProSiteProfiles Zinc finger RING-type profile. 158 196 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02982 Vivi-Chr5 118151830 118155811 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02982 13 212 C3H Transcription Factor Family AT5G48655 53.960 5.03e-55 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02982 K22651 - gmx:100792853 291.197