Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02980 ATGATGGTGATCATGCAAGAGCAACAACATCAACCCCATCAGCAGCAGCAGAATCCTTCTCTACTGTTGCCAAACCTCACCACCACCTCCCTTAGGTCACCATCCTCCACCTCCGCCGCCTCCCAATCCCATCTTCATTCGCCTATCCATATCGCTACCCACCGCCAACCCCTACTCCCGCAACTTCCGGCGCCACTCGCGACTGTTCTCCCGTCCGGGGAGGCGGTTTCGACGGCGCCGCCGAATTTGCAGTTGGCAAGGGTCCGTCTGTCGGACATTGCTCCGTATGACGGTGCACCGGCGGGACCTTATGTCAGGGCAATAGAAATGCTGTGTTCGTCTCTGTTGAAGCATAATGCGGCGGTGATTGAATTAGGGAGTGAAGATACTGCTCTGATGCGATGTGGATTGGAAGGTGCTAGATTGTTCTTCAGGAGTAGAGCACATCTTGGTGTTGGGAAGGGAAGTCGCGGGGTTTACATGTATAGGGCAGGAAGGGCTTTGGAGGATTGGGATTCATCTCCACCTTGCATGGCTGATATTTTTAGGTGCATGGGAAAGGCTTCTCGTGTTGCTTTGTCAGCCATTGCAAGGCATCTGCGGCTGAGAAGCGATGTTTTTAACCACCTGCTTGATGATGCTCCATTACCTGCTAACGAGGTGTCTTCTTCTGTTCTTGTTGGGACCTACTCACACGCGTCTTTGCAAAATGGAAAAGGTGCCATTGGAGGTGGTAAGCCCAGCGTCAATGGTGAAGACGAGAAGGGATTATTGACCTTGATATCTTCTGACACTCCTGGTTTTCAGGTATGTGATCCCAATGGCCGCTGGTATCTGGCAGACAGTGGGTCTGGGCCAGGGGATCTTTTACTGATAACAGGCCGGGCGCTTAGCCATGCTACTGCAGGTCTACATCCAGCCGCATCATATAGAGCTTCTCCAGATTGTTTTCTGAGTCCGAATAGTGGAGGAAGGACTTCACTTGCATATAGACTCATGCCTCAGGGCAATGCTATACTAGATTGTTCTCCAATTGCAGCAGCTGGTCATGTTATTCCTCAAAGCTATGTTCCAATATCTGTAAGCCAGTTTATGGACGACCTTGCTGCTGAAGAACTGATAGGGCGCCAATGTGTTAATGATGATGTTGCCCAAAGCAATGTGAATAAGGACCCATCATTAAGAAGTGTTCTGTCCGATCCTTTGTCTGGCTCATTCTTGGAAGATGCAATGCTTGTCTCATGTGGACATTCTTTTGGTGGTCTCACACTGAGAAGAGTCATTGAAACATCAAGATGCACCCTTTGCAATGTTGATATTGAGACTGGTTCTCTGATCCCTAATCTCGCTCTTAGAGCTGCAGCTGCTGCTGTCAAGCATGAGGATGATCGAAGGTTATTTCGTAATGCCGCTCTTCGGAAGCGGCGGAAAGAAATGGGTGAACCAATGGATCCAATCAGAAGAGTGAACAGGGAAAATGGAGATTTTACTTCTACTGATGGACTCCAGCGGGGAGTACAATATCCATTTTCAGTAAATGAGAAAGTTATTATTAAGGGTAACAGGAGAACACCTGAAAAATTTGTCGGGAAAGAAGCTGTAATTACGTCTCAGTGTCTCAATGGCTGGTATTTGCTCAAGATTATTGGATCTGGAGAGAATGTCCGCCTGCAGTATCGTTCTCTCAGGAAGTTCTTGAACTCAACAACTACGGAAGACCAGAATCAGTTGCAGTTAGTTCAAAATAGCAGCTCTTAA 1758 0.4812 MMVIMQEQQHQPHQQQQNPSLLLPNLTTTSLRSPSSTSAASQSHLHSPIHIATHRQPLLPQLPAPLATVLPSGEAVSTAPPNLQLARVRLSDIAPYDGAPAGPYVRAIEMLCSSLLKHNAAVIELGSEDTALMRCGLEGARLFFRSRAHLGVGKGSRGVYMYRAGRALEDWDSSPPCMADIFRCMGKASRVALSAIARHLRLRSDVFNHLLDDAPLPANEVSSSVLVGTYSHASLQNGKGAIGGGKPSVNGEDEKGLLTLISSDTPGFQVCDPNGRWYLADSGSGPGDLLLITGRALSHATAGLHPAASYRASPDCFLSPNSGGRTSLAYRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMDDLAAEELIGRQCVNDDVAQSNVNKDPSLRSVLSDPLSGSFLEDAMLVSCGHSFGGLTLRRVIETSRCTLCNVDIETGSLIPNLALRAAAAAVKHEDDRRLFRNAALRKRRKEMGEPMDPIRRVNRENGDFTSTDGLQRGVQYPFSVNEKVIIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGSGENVRLQYRSLRKFLNSTTTEDQNQLQLVQNSSS 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02980 585 MobiDBLite consensus disorder prediction 1 20 - -
Vivi5g02980 585 Gene3D - 158 373 IPR027443 -
Vivi5g02980 585 MobiDBLite consensus disorder prediction 25 45 - -
Vivi5g02980 585 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 392 462 IPR013083 -
Vivi5g02980 585 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 84 576 - -
Vivi5g02980 585 SUPERFAMILY RING/U-box 394 460 - -
Vivi5g02980 585 SUPERFAMILY Clavaminate synthase-like 175 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02980 Vivi-Chr5 118127739 118134926 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02980 394 564 Plant U-box Gene Family AT5G05230 42.775 7.35e-38 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02980 - - gmx:100807199 876.315