Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02978 ATGATGGTGATCATGCAAGAGCAACAACATCAACCCCATCAGCAGCAGCAGAATCCTTCTCTACTGTTGCCAAACCTCACCACCACCTCCCTTAGGTCACCATCCTCCACCTCCGCCGCCTCCCAATCCCATCTTCATTCGCCTATCCATATCGCTACCCACCGCCAACCCCTACTCCCGCAACTTCCGGCGCCACTCGCGACTGTTCTCCCGTCCGGGGAGGCGGTTTCGACGGCGCCGCCGAATTTGCAGTTGGCAAGGGTCCGTCTGTCGGACATTGCTCCGTATGACGGTGCACCGGCGGGACCTTATGTCAGGGCAATAGAAATGCTGTGTTCGTCTCTGTTGAAGCATAATGCGGCGGTGATTGAATTAGGGAGTGAAGATACTGCTCTGATGCGATGTGGATTGGAAGGTGCTAGATTGTTCTTCAGGAGTAGAGCACATCTTGGTGTTGGGAAGGGAAGTCGCGGGGTTTACATGTATAGGGCAGGAAGGGCTTTGGAGGATTGGGATTCATCTCCACCTTGCATGGCTGATATTTTTAGGTGCATGGGAAAGGCTTCTCGTGTTGCTTTGTCAGCCATTGCAAGGCATCTGCGGCTGAGAAGCGATGTTTTTAACCACCTGCTTGATGATGCTCCATTACCTGCTAACGAGGTGTCTTCTTCTGTTCTTGTTGGGACCTACTCACACGCGTCTTTGCAAAATGGAAAAGGTGCCATTGGAGGTGGTAAGCCCAGCGTCAATGGTGAAGACGAGAAGGGATTATTGACCTTGATATCTTCTGACACTCCTGGTTTTCAGGTATGTGATCCCAATGGCCGCTGGTATCTGGCAGACAGTGGGTCTGGGCCAGGGGATCTTTTACTGATAACAGGCCGGGCGCTTAGCCATGCTACTGCAGGTCTACATCCAGCCGCATCATATAGAGCTTCTCCAGATTGTTTTCTGAGTCCGAATAGTGGAGGAAGGTGCCAATATATATTTATAAATTTGGTGACTTCACTTGCATATAGACTCATGCCTCAGGGCAATGCTATACTAGATTGTTCTCCAATTGCAGCAGCTGGTCATGTTATTCCTCAAAGCTATGTTCCAATATCTGTAAGCCAGTTTATGGACGACCTTGCTGCTGAAGAACTGATAGGGCGCCAATGTGTTAATGATGATTCAAGATGCACCCTTTGCAATGTTGATATTGAGACTGGTTCTCTGATCCCTAATCTCGCTCTTAGAGCTGCAGCTGCTGCTGTCAAGCATGAGGATGATCGAAGGTTATTTCGTAATGCCGCTCTTCGGAAGCGGCGGAAAGAAATGGGTGAACCAATGGATCCAATCAGAAGAGTGAACAGGGAAAATGGAGATTTTACTTCTACTGATGGACTCCAGCGGGGAGTACAATATCCATTTTCAGTAAATGAGAAAGTTATTATTAAGGGTAACAGGAGAACACCTGAAAAATTTGTCGGGAAAGAAGCTGTAATTACGTCTCAGTGTCTCAATGGCTGGTATTTGCTCAAGATTATTGGATCTGGAGAGAATGTCCGCCTGCAGTATCGTTCTCTCAGGAAGTTCTTGAACTCAACAACTACGGAAGACCAGAATCAGTTGCAGTTAGTTCAAAATAGCAGCTCTTAA 1641 0.4814 MMVIMQEQQHQPHQQQQNPSLLLPNLTTTSLRSPSSTSAASQSHLHSPIHIATHRQPLLPQLPAPLATVLPSGEAVSTAPPNLQLARVRLSDIAPYDGAPAGPYVRAIEMLCSSLLKHNAAVIELGSEDTALMRCGLEGARLFFRSRAHLGVGKGSRGVYMYRAGRALEDWDSSPPCMADIFRCMGKASRVALSAIARHLRLRSDVFNHLLDDAPLPANEVSSSVLVGTYSHASLQNGKGAIGGGKPSVNGEDEKGLLTLISSDTPGFQVCDPNGRWYLADSGSGPGDLLLITGRALSHATAGLHPAASYRASPDCFLSPNSGGRCQYIFINLVTSLAYRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMDDLAAEELIGRQCVNDDSRCTLCNVDIETGSLIPNLALRAAAAAVKHEDDRRLFRNAALRKRRKEMGEPMDPIRRVNRENGDFTSTDGLQRGVQYPFSVNEKVIIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGSGENVRLQYRSLRKFLNSTTTEDQNQLQLVQNSSS 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02978 546 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 84 537 - -
Vivi5g02978 546 MobiDBLite consensus disorder prediction 1 20 - -
Vivi5g02978 546 SUPERFAMILY Clavaminate synthase-like 175 322 - -
Vivi5g02978 546 Gene3D - 158 381 IPR027443 -
Vivi5g02978 546 MobiDBLite consensus disorder prediction 25 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02978 Vivi-Chr5 118127739 118134932 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02978 394 525 Plant U-box Gene Family AT5G05230 42.537 2.87e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02978 - - gmx:100807199 765.763