Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02972 ATGACGCTATCCACCGCGATATCTCCCTCCCTCACCGACTCCAAGAAGAAGAAGAACCGCAACAAAAATGGAGGAGCAGAAGAAGACGAATCAACGGAGCAACAAAAACAACCAGACTTCATGATCAAACCAACCTCAGGAGGTTCATCAATCGACACTTCAGAGTGGCCGATACTCCTCAAGAACTACGACCGCCTCAACATCCGTACCGGTCACTACACTCCTCTTCCCGCCGGTCACTCTCCGCTCAAACGGCCACTCAACGATTACCTCAAATACGGTGTCCTCAACCTTGATAAGCCAGCTAACCCTTCTTCTCACGAAGTTGTTGCTTGGATCAAGCGGATTCTCCGTGTCGAGAAGACCGGTCACAGTGGTACTCTCGATCCTAAGGTTACTGGGAATTTGATTGTTTGCATTGACAGAGCAACGAGGCTTGTGAAGTCTCAACAAGGTGCTGGGAAAGAGTATGTTTGTATCGCGAGACTTCATTCGGCTGTTCCTGATGTTGCTAAGGTAGCTCGTGCTCTTGAAACCCTAACTGGTGCTGTTTTTCAAAGGCCACCTTTGATTTCTGCTGTTAAGCGTCAACTTAGGATTAGAACTGTTTATGAGAGTAAGTTGCTTGAATATGATGCTGAGAGGCATTTAGTTGTGTTTTGGATTTCGTGTGAGGCTGGTACTTATGTTAGGACTATGTGTGTTCATTTGGGTTTATTGCTTGGTGTTGGTAGTCATATGCAAGAGCTTAGGAGGGTTAGGTCTGGGATTATGGGTGAGAAAGATAATATGGTTTCTATGCATGATGTAATGGATGCTCAATGGGTTTATGATAATAATCGTGACGAGACTTATTTGAGGAGGGTTGTTATGCCTTTGGAAGTTCTTTTGACTAGTTATAAGAGAGTGGTTGTTAAGGATTCGGCTGTTAATGCTATTTGTTATGGGGCTAAGTTGATGATTCCGGGTTTGCTTAGGTTTGAGAATGATATTGATGCTGGTGAGGAGGTTGTGCTTATGACAACCAAGGGTGAAGCTATTGCTCTAGGGATTGCTGAGATGACTACTGCTGTTATGGCCAGTTGTGATCATGGGGTTGTTGCTAAGATCAAGAGGGTGGTTATGGATAGGGATACTTATCCGAGGAAATGGGGTTTGGGTCCTAGGGCTTCTACGAAGAAGAAGCTGATTGCTCTAGGGAAGCTTGATAAGCACGGGAAGCCAAATGAGCATACTCCTGAAGAGTGGGTGAGGAATGTGGAGGTTGCATTGCCTGCTGGTTGGGACAGAGCGATTGCTGCAAAGGCTGCTGCTGCCACCGAAGCTGTCGAGGTGAAGAAAGAGGTTGCTGAAGATGGGGAAGGGCGTAAGAGAAAGAAAGATGAAACTGTTGATAGTCCTGCTCCTGCTAAGAAGGTCAAAGTTGAAGATGAAGAAAAATTGAAGACCATAAAGGTAGAAGAAGCTGATGCGGATGTTGAAGACGAGAAGAAAGAAAAGAAGAAAAAGAAAAAGAAGAAGGATAAGGAGAATGTAGATGCGGCATCTTCTGATGAGGAGAAAGTTGTAAAGGAGAAGAAAAAGAAGAACAAGGAAAAGAGTGAAGATGAGAAGTCTGAGAAGAAGAAAAAGAAGAAAGATAAAGAAGCCAAAGACAGTGCTGCGGATATCGGTAACGGAAAGGACGAAGGCAGCGCCGATAAAAGTGAAAAGAAGCACAAGAAAAAGAAAAACAAAGATGCCCAAGATGAATAG 1755 0.445 MTLSTAISPSLTDSKKKKNRNKNGGAEEDESTEQQKQPDFMIKPTSGGSSIDTSEWPILLKNYDRLNIRTGHYTPLPAGHSPLKRPLNDYLKYGVLNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVARALETLTGAVFQRPPLISAVKRQLRIRTVYESKLLEYDAERHLVVFWISCEAGTYVRTMCVHLGLLLGVGSHMQELRRVRSGIMGEKDNMVSMHDVMDAQWVYDNNRDETYLRRVVMPLEVLLTSYKRVVVKDSAVNAICYGAKLMIPGLLRFENDIDAGEEVVLMTTKGEAIALGIAEMTTAVMASCDHGVVAKIKRVVMDRDTYPRKWGLGPRASTKKKLIALGKLDKHGKPNEHTPEEWVRNVEVALPAGWDRAIAAKAAAATEAVEVKKEVAEDGEGRKRKKDETVDSPAPAKKVKVEDEEKLKTIKVEEADADVEDEKKEKKKKKKKKDKENVDAASSDEEKVVKEKKKKNKEKSEDEKSEKKKKKKDKEAKDSAADIGNGKDEGSADKSEKKHKKKKNKDAQDE 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02972 584 SUPERFAMILY PUA domain-like 300 381 IPR015947 -
Vivi5g02972 584 CDD PseudoU_synth_hDyskerin 92 274 - -
Vivi5g02972 584 SUPERFAMILY Pseudouridine synthase 53 298 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vivi5g02972 584 Gene3D Pseudouridine synthase 86 292 - -
Vivi5g02972 584 NCBIfam uncharacterized domain 2 296 372 IPR004521 GO:0003723
Vivi5g02972 584 SMART pua_5 301 375 IPR002478 GO:0003723
Vivi5g02972 584 CDD PUA_Cbf5 299 373 - -
Vivi5g02972 584 MobiDBLite consensus disorder prediction 447 584 - -
Vivi5g02972 584 MobiDBLite consensus disorder prediction 1 49 - -
Vivi5g02972 584 Pfam TruB family pseudouridylate synthase (N terminal domain) 114 230 IPR002501 GO:0006396
Vivi5g02972 584 Coils Coil 486 513 - -
Vivi5g02972 584 NCBIfam RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 60 385 IPR004802 GO:0006396
Vivi5g02972 584 Coils Coil 524 551 - -
Vivi5g02972 584 MobiDBLite consensus disorder prediction 13 36 - -
Vivi5g02972 584 Gene3D PUA domain 53 384 IPR036974 GO:0003723
Vivi5g02972 584 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 15 509 IPR004802 GO:0006396
Vivi5g02972 584 Pfam tRNA pseudouridylate synthase B C-terminal domain 231 297 IPR032819 -
Vivi5g02972 584 Pfam DKCLD (NUC011) domain 53 110 IPR012960 -
Vivi5g02972 584 FunFam H/ACA ribonucleoprotein complex subunit CBF5 86 292 - -
Vivi5g02972 584 Pfam PUA domain 301 373 IPR002478 GO:0003723
Vivi5g02972 584 ProSiteProfiles PUA domain profile. 300 375 - -
Vivi5g02972 584 SMART DKCLD_2 52 110 IPR012960 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02972 Vivi-Chr5 118081827 118084152 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02972 15 469 NAC Transcription Factor Family AT3G57150 81.099 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02972 K11131 - gmx:100806355 733.021