Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02971 ATGGCATCTTCTTTCGTCAAGCTTGACGATTCTCCAATGTTCCAGAAGCAGTTATTTTTTATGGAAGACACAGCAGATGAGTTAAAGGATCGGTGCCAGAATCTATTCAAAGGGTGTAAGAAGTTTATGACAGCTTTGGGGGAAGCACATAATGGAGAAAACGCCTTTGCTGATTCATTAGAAGCATTTGGAGGTGGCTACGACGACCCTGTTAGTGTATCAGTTGGAGGACCCGTCATATCTAAGTTTATCACTGCACTACGTGAATTAGCGACTTTTAAAGAGCTTCTTCGCTCACAGGTAGAGCATGTATTGATTGACCGGTTGTCAGAGTTTCTAAATGTTGATTTGCAAAATGCAAAGGAATCTCGTCGTCGTTTTGACAAGTCTGTTCAATCGTATGATCAGTCACGAGAAAAGTTTGTTTCTTTGAAGAAGAATACTCCTGAAGATATTGTTGCTGAATTAGAAGAGGGTCTACAAAATTCGAAGTCATCATTTGAGAAAAGCCGCTTCAATCTAGTACACTCTCTCATGAATATTGAAGTGAAAAAGAAGTACGAGTTCTTGGAGTCAATAAGTGCAATAATGGACGCTCATCTGAGATACTTTAAACTGGGTTATGACTTACTGAGCCAAATGGAGCCTTATATTCACCAGGTGCTAACGTATGCTCAACAATCTAAAGAAGTGGCTAATATTGAGCAAGATAAGCTTGCAAAACGGATCCAGGAATACAGGACGCAGACAGAGGTTGAAAATATACCCATGCCAGGTGCTGATGGCACCCAACCTGTAGGTTTGAATTCTTATAAAAACTTTGAAGCAGGGATGCAGTCTGCAACCAAAGGCGAGATTCAAACAGTTAAACAAGGCTATCTGTTAAAACGATCATCAAGGATGCGAGGAGATTGGAAAAGGAGGTTTTTTGTACTTGATAACCATGGGAGTTTATATTATTACAGATCAAAAGGACCCAAACCCGCGGGATTTCAGTCATATAATTATAGTCGTTCTTCTGAACAAAATAGTGGCATGTTTGGTAGATTCCGTTCAAGGCATAGTAGGGCAGCGTCACTAAATGAGGATATTTTGGGTTGTTGTACAGTTGATCTGTGCACATCCACTATAAAGATGGATGCAGAGGATACAGATCTACGACTTTGCTTCCGTATTATTTCTCCCTCAAAAACATATACACTGCAGGCTGAAAATGAAGCTGATAGGATGGACTGGGTAAACAAAATTACTGGAGCTATCACCACGCTTTTTAATTTTCAGTTTCTTCAACAGCCTCATTATGGTAAATTGCAATTACAAAATAAAAACTCACCAACTGGTTCTTCCTTGACAAGTCAACAAGAGGATAGTAATAAATCTTTGATGGATGATGTATATTCCAAAGAAGTGGGTAGTGTCTCTAAAATTTTAAGGGGAGTTCCTGGGAATGACAAGTGTGCTGAGTGCAGTACTCCTGAACCAGACTGGGCATCTCTAAACCTTGGTATACTGCTGTGTATTGAATGCTCTGGAGTGCATCGCAATCTTGGAGTTCATATCTCAAAGGTGAGATCTATAACGTTAGATGTGAAGGTTTGGGAACCTACCATTTTGGAGTTATTCAATAACTTAGGTAATACTTTTTGTAATTCTATTTGGGAGGGCTTGCTTCTGCTTGGTGATGAAAGAGTAGGTGAATCAAATGTGCCTTTGAAACCACGTTCCACAGACCCCTCTCAATATAAAGAAAAGTACATCCAAGCAAAGTGTTACTTTTATGGAGAGATTATGTACCCAGATCACTGCTCTTAG 1812 0.3974 MASSFVKLDDSPMFQKQLFFMEDTADELKDRCQNLFKGCKKFMTALGEAHNGENAFADSLEAFGGGYDDPVSVSVGGPVISKFITALRELATFKELLRSQVEHVLIDRLSEFLNVDLQNAKESRRRFDKSVQSYDQSREKFVSLKKNTPEDIVAELEEGLQNSKSSFEKSRFNLVHSLMNIEVKKKYEFLESISAIMDAHLRYFKLGYDLLSQMEPYIHQVLTYAQQSKEVANIEQDKLAKRIQEYRTQTEVENIPMPGADGTQPVGLNSYKNFEAGMQSATKGEIQTVKQGYLLKRSSRMRGDWKRRFFVLDNHGSLYYYRSKGPKPAGFQSYNYSRSSEQNSGMFGRFRSRHSRAASLNEDILGCCTVDLCTSTIKMDAEDTDLRLCFRIISPSKTYTLQAENEADRMDWVNKITGAITTLFNFQFLQQPHYGKLQLQNKNSPTGSSLTSQQEDSNKSLMDDVYSKEVGSVSKILRGVPGNDKCAECSTPEPDWASLNLGILLCIECSGVHRNLGVHISKVRSITLDVKVWEPTILELFNNLGNTFCNSIWEGLLLLGDERVGESNVPLKPRSTDPSQYKEKYIQAKCYFYGEIMYPDHCS 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02971 603 SUPERFAMILY PH domain-like 287 437 - -
Vivi5g02971 603 SMART arf_gap_3 471 597 IPR001164 GO:0005096
Vivi5g02971 603 CDD ArfGap 475 589 - -
Vivi5g02971 603 Gene3D Arf GTPase activating protein 456 594 IPR038508 -
Vivi5g02971 603 CDD PH_ACAP 290 425 - -
Vivi5g02971 603 PRINTS HIV Rev interacting protein signature 483 502 IPR001164 GO:0005096
Vivi5g02971 603 PRINTS HIV Rev interacting protein signature 525 546 IPR001164 GO:0005096
Vivi5g02971 603 PRINTS HIV Rev interacting protein signature 502 519 IPR001164 GO:0005096
Vivi5g02971 603 ProSiteProfiles ARF GTPase-activating proteins domain profile. 471 589 IPR001164 GO:0005096
Vivi5g02971 603 ProSiteProfiles PH domain profile. 287 421 IPR001849 -
Vivi5g02971 603 CDD BAR_SFC_plant 16 217 IPR035670 -
Vivi5g02971 603 Gene3D Arfaptin homology (AH) domain/BAR domain 7 253 IPR027267 -
Vivi5g02971 603 SUPERFAMILY ArfGap/RecO-like zinc finger 474 591 IPR037278 -
Vivi5g02971 603 MobiDBLite consensus disorder prediction 440 459 - -
Vivi5g02971 603 Pfam Putative GTPase activating protein for Arf 475 587 IPR001164 GO:0005096
Vivi5g02971 603 SMART PH_update 288 423 IPR001849 -
Vivi5g02971 603 PANTHER CENTAURIN/ARF 3 589 IPR045258 GO:0005096
Vivi5g02971 603 Pfam BAR domain of APPL family 8 230 IPR004148 GO:0005515|GO:0005737
Vivi5g02971 603 Gene3D - 280 431 IPR011993 -
Vivi5g02971 603 SMART 5bar 13 220 IPR004148 GO:0005515|GO:0005737
Vivi5g02971 603 Pfam PH domain 289 420 IPR001849 -
Vivi5g02971 603 SUPERFAMILY BAR/IMD domain-like 8 310 IPR027267 -
Vivi5g02971 603 Coils Coil 229 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02971 Vivi-Chr5 118050926 118062065 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02971 481 599 C2H2 Transcription Factor Family AT3G07940 41.667 3.59e-18 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02971 K12489 - gmx:100796740 994.956