Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02970 ATGGAAGACACAGCAGATGAGTTAAAGGATCGGTGCCAGAATCTATTCAAAGGGTGTAAGAAGTTTATGACAGCTTTGGGGGAAGCACATAATGGAGAAAACGCCTTTGCTGATTCATTAGAAGCATTTGGAGGTGGCTACGACGACCCTGTTAGTGTATCAGTTGGAGGACCCGTCATATCTAAGTTTATCACTGCACTACGTGAATTAGCGACTTTTAAAGAGCTTCTTCGCTCACAGGTAGAGCATGTATTGATTGACCGGTTGTCAGAGTTTCTAAATGTTGATTTGCAAAATGCAAAGGAATCTCGTCGTCGTTTTGACAAGTCTGTTCAATCGTATGATCAGTCACGAGAAAAGTTTGTTTCTTTGAAGAAGAATACTCCTGAAGATATTGTTGCTGAATTAGAAGAGGGTCTACAAAATTCGAAGTCATCATTTGAGAAAAGCCGCTTCAATCTAGTACACTCTCTCATGAATATTGAAGTGAAAAAGAAGTACGAGTTCTTGGAGTCAATAAGTGCAATAATGGACGCTCATCTGAGATACTTTAAACTGGGTTATGACTTACTGAGCCAAATGGAGCCTTATATTCACCAGGTGCTAACGTATGCTCAACAATCTAAAGAAGTGGCTAATATTGAGCAAGATAAGCTTGCAAAACGGATCCAGGAATACAGGACGCAGACAGAGGTTGAAAATATACCCATGCCAGGTGCTGATGGCACCCAACCTGTAGGTTTGAATTCTTATAAAAACTTTGAAGCAGGGATGCAGTCTGCAACCAAAGGCGAGATTCAAACAGTTAAACAAGGCTATCTGTTAAAACGATCATCAAGGATGCGAGGAGATTGGAAAAGGAGGTTTTTTGTACTTGATAACCATGGGAGTTTATATTATTACAGATCAAAAGGACCCAAACCCGCGGGATTTCAGTCATATAATTATAGTCGTTCTTCTGAACAAAATAGTGGCATGTTTGGTAGATTCCGTTCAAGGCATAGTAGGGCAGCGTCACTAAATGAGGATATTTTGGGTTGTTGTACAGTTGATCTGTGCACATCCACTATAAAGATGGATGCAGAGGATACAGATCTACGACTTTGCTTCCGTATTATTTCTCCCTCAAAAACATATACACTGCAGGCTGAAAATGAAGCTGATAGGATGGACTGGGTAAACAAAATTACTGGAGCTATCACCACGCTTTTTAATTTTCAGTTTCTTCAACAGCCTCATTATGGTAAATTGCAATTACAAAATAAAAACTCACCAACTGGTTCTTCCTTGACAAGTCAACAAGAGGATAGTAATAAATCTTTGATGGATGATGTATATTCCAAAGAAGTGGGTAGTGTCTCTAAAATTTTAAGGGGAGTTCCTGGGAATGACAAGTGTGCTGAGTGCAGTACTCCTGAACCAGACTGGGCATCTCTAAACCTTGGTATACTGCTGTGTATTGAATGCTCTGGAGTGCATCGCAATCTTGGAGTTCATATCTCAAAGGTGAGATCTATAACGTTAGATGTGAAGGTTTGGGAACCTACCATTTTGGAGTTATTCAATAACTTAGGTAATACTTTTTGTAATTCTATTTGGGAGGGCTTGCTTCTGCTTGGTGATGAAAGAGTAGGTGAATCAAATGTGCCTTTGAAACCACGTTCCACAGACCCCTCTCAATATAAAGAAAAGTACATCCAAGCAAAGTATGCAGAGAAATCACTAGTCATCCGGGAAGAGGACATACCCGAAAATCCTTCAGTTTCCACAAAAATCTGGCAAGCAGTTCAGTCTTTAAATGTAAAAGAAGTGTATCGCCTTATTGTAACATCAACTTCAAATCCAATAAACACAAAATTTGAAGAAGCGGTTTCCCATGCCGAGACTGAAAATCATCAGCATGATCCTGAAGCCTGTCTGAGGATTAAAGAGGCTAGTGAAACAGAGAGTTGTTTCCGCGGTTGGTCTTTATTACACCTAGCATGTCATTCTGGCAGTACATTAATGGTTGAGCTGTTGCTCCAATTTGGTGCTGATATAAACATGCGCGATTATCATGGAAGGACTCCGTTGCACCGCTGCATTTCTAGTGGGAAAAATTCATTGGCTAAGTTTTTACTAAGAAGGGGTGCAAAACCATCAATTAAAGACGCTGGAGGACATACTGTACTTGAAAGAGCAATGGAGTTGGGAGCAATAACTGACGAACAGCTATTTATCTTGCTTGTTGAGTGCCAGTAA 2241 0.4016 MEDTADELKDRCQNLFKGCKKFMTALGEAHNGENAFADSLEAFGGGYDDPVSVSVGGPVISKFITALRELATFKELLRSQVEHVLIDRLSEFLNVDLQNAKESRRRFDKSVQSYDQSREKFVSLKKNTPEDIVAELEEGLQNSKSSFEKSRFNLVHSLMNIEVKKKYEFLESISAIMDAHLRYFKLGYDLLSQMEPYIHQVLTYAQQSKEVANIEQDKLAKRIQEYRTQTEVENIPMPGADGTQPVGLNSYKNFEAGMQSATKGEIQTVKQGYLLKRSSRMRGDWKRRFFVLDNHGSLYYYRSKGPKPAGFQSYNYSRSSEQNSGMFGRFRSRHSRAASLNEDILGCCTVDLCTSTIKMDAEDTDLRLCFRIISPSKTYTLQAENEADRMDWVNKITGAITTLFNFQFLQQPHYGKLQLQNKNSPTGSSLTSQQEDSNKSLMDDVYSKEVGSVSKILRGVPGNDKCAECSTPEPDWASLNLGILLCIECSGVHRNLGVHISKVRSITLDVKVWEPTILELFNNLGNTFCNSIWEGLLLLGDERVGESNVPLKPRSTDPSQYKEKYIQAKYAEKSLVIREEDIPENPSVSTKIWQAVQSLNVKEVYRLIVTSTSNPINTKFEEAVSHAETENHQHDPEACLRIKEASETESCFRGWSLLHLACHSGSTLMVELLLQFGADINMRDYHGRTPLHRCISSGKNSLAKFLLRRGAKPSIKDAGGHTVLERAMELGAITDEQLFILLVECQ 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02970 746 Gene3D - 260 411 IPR011993 -
Vivi5g02970 746 SUPERFAMILY Ankyrin repeat 631 742 IPR036770 -
Vivi5g02970 746 CDD BAR_SFC_plant 1 197 IPR035670 -
Vivi5g02970 746 CDD PH_ACAP 270 405 - -
Vivi5g02970 746 ProSiteProfiles BAR domain profile. 1 207 IPR004148 GO:0005515|GO:0005737
Vivi5g02970 746 Gene3D Arf GTPase activating protein 431 583 IPR038508 -
Vivi5g02970 746 PRINTS HIV Rev interacting protein signature 463 482 IPR001164 GO:0005096
Vivi5g02970 746 PRINTS HIV Rev interacting protein signature 482 499 IPR001164 GO:0005096
Vivi5g02970 746 PRINTS HIV Rev interacting protein signature 505 526 IPR001164 GO:0005096
Vivi5g02970 746 SUPERFAMILY BAR/IMD domain-like 2 290 IPR027267 -
Vivi5g02970 746 ProSiteProfiles Ankyrin repeat region circular profile. 653 684 - -
Vivi5g02970 746 Pfam Putative GTPase activating protein for Arf 455 576 IPR001164 GO:0005096
Vivi5g02970 746 SMART ANK_2a 686 715 IPR002110 GO:0005515
Vivi5g02970 746 SMART ANK_2a 653 682 IPR002110 GO:0005515
Vivi5g02970 746 Pfam Ankyrin repeats (many copies) 655 707 IPR002110 GO:0005515
Vivi5g02970 746 ProSiteProfiles PH domain profile. 267 401 IPR001849 -
Vivi5g02970 746 PANTHER CENTAURIN/ARF 1 743 IPR045258 GO:0005096
Vivi5g02970 746 ProSiteProfiles Ankyrin repeat region circular profile. 686 717 - -
Vivi5g02970 746 SMART arf_gap_3 451 583 IPR001164 GO:0005096
Vivi5g02970 746 ProSiteProfiles Ankyrin repeat profile. 686 718 IPR002110 GO:0005515
Vivi5g02970 746 SUPERFAMILY PH domain-like 267 417 - -
Vivi5g02970 746 ProSiteProfiles Ankyrin repeat profile. 653 685 IPR002110 GO:0005515
Vivi5g02970 746 Pfam PH domain 269 400 IPR001849 -
Vivi5g02970 746 SUPERFAMILY ArfGap/RecO-like zinc finger 454 576 IPR037278 -
Vivi5g02970 746 MobiDBLite consensus disorder prediction 420 439 - -
Vivi5g02970 746 CDD ArfGap 455 570 - -
Vivi5g02970 746 ProSiteProfiles ARF GTPase-activating proteins domain profile. 451 583 IPR001164 GO:0005096
Vivi5g02970 746 Gene3D - 586 737 IPR036770 -
Vivi5g02970 746 Pfam BAR domain of APPL family 2 210 IPR004148 GO:0005515|GO:0005737
Vivi5g02970 746 Gene3D Arfaptin homology (AH) domain/BAR domain 1 233 IPR027267 -
Vivi5g02970 746 SMART 5bar 1 200 IPR004148 GO:0005515|GO:0005737
Vivi5g02970 746 Coils Coil 209 229 - -
Vivi5g02970 746 SMART PH_update 268 403 IPR001849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02970 Vivi-Chr5 118050141 118062013 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02970 461 572 C2H2 Transcription Factor Family AT3G07940 42.478 4.78e-19 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02970 K12489 - gmx:100796740 1244.95