Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02969 ATGGCATCTTCTTTCGTCAAGCTTGACGATTCTCCAATGTTCCAGAAGCAGTTATTTTTTATGGAAGACACAGCAGATGAGTTAAAGGATCGGTGCCAGAATCTATTCAAAGGGTGTAAGAAGTTTATGACAGCTTTGGGGGAAGCACATAATGGAGAAAACGCCTTTGCTGATTCATTAGAAGCATTTGGAGGTGGCTACGACGACCCTGTTAGTGTATCAGTTGGAGGACCCGTCATATCTAAGTTTATCACTGCACTACGTGAATTAGCGACTTTTAAAGAGCTTCTTCGCTCACAGGTAGAGCATGTATTGATTGACCGGTTGTCAGAGTTTCTAAATGTTGATTTGCAAAATGCAAAGGAATCTCGTCGTCGTTTTGACAAGTCTGTTCAATCGTATGATCAGTCACGAGAAAAGTTTGTTTCTTTGAAGAAGAATACTCCTGAAGATATTGTTGCTGAATTAGAAGAGGGTCTACAAAATTCGAAGTCATCATTTGAGAAAAGCCGCTTCAATCTAGTACACTCTCTCATGAATATTGAAGTGAAAAAGAAGTACGAGTTCTTGGAGTCAATAAGTGCAATAATGGACGCTCATCTGAGATACTTTAAACTGGGTTATGACTTACTGAGCCAAATGGAGCCTTATATTCACCAGGTGCTAACGTATGCTCAACAATCTAAAGAAGTGGCTAATATTGAGCAAGATAAGCTTGCAAAACGGATCCAGGAATACAGGACGCAGACAGAGGTTGAAAATATACCCATGCCAGGTGCTGATGGCACCCAACCTGTAGGTTTGAATTCTTATAAAAACTTTGAAGCAGGGATGCAGTCTGCAACCAAAGGCGAGATTCAAACAGTTAAACAAGGCTATCTGTTAAAACGATCATCAAGGATGCGAGGAGATTGGAAAAGGAGGTTTTTTGTACTTGATAACCATGGGAGTTTATATTATTACAGATCAAAAGGACCCAAACCCGCGGGATTTCAGTCATATAATTATAGTCGTTCTTCTGAACAAAATAGTGGCATGTTTGGTAGATTCCGTTCAAGGCATAGTAGGGCAGCGTCACTAAATGAGGATATTTTGGGTTGTTGTACAGTTGATCTGTGCACATCCACTATAAAGATGGATGCAGAGGATACAGATCTACGACTTTGCTTCCGTATTATTTCTCCCTCAAAAACATATACACTGCAGGCTGAAAATGAAGCTGATAGGATGGACTGGGTAAACAAAATTACTGGAGCTATCACCACGCTTTTTAATTTTCAGTTTCTTCAACAGCCTCATTATGGTAAATTGCAATTACAAAATAAAAACTCACCAACTGGTTCTTCCTTGACAAGTCAACAAGAGGATAGTAATAAATCTTTGATGGATGATGTATATTCCAAAGAAGTGGGTAGTGTCTCTAAAATTTTAAGGGGAGTTCCTGGGAATGACAAGTGTGCTGAGTGCAGTACTCCTGAACCAGACTGGGCATCTCTAAACCTTGGTATACTGCTGTGTATTGAATGCTCTGGAGTGCATCGCAATCTTGGAGTTCATATCTCAAAGGTGAGATCTATAACGTTAGATGTGAAGGTTTGGGAACCTACCATTTTGGAGTTATTCAATAACTTAGGTAATACTTTTTGTAATTCTATTTGGGAGGGCTTGCTTCTGCTTGGTGATGAAAGAGTAGGTGAATCAAATGTGCCTTTGAAACCACGTTCCACAGACCCCTCTCAATATAAAGAAAAGTACATCCAAGCAAAGTATGCAGAGAAATCACTAGTCATCCGGGAAGAGGACATACCCGAAAATCCTTCAGTTTCCACAAAAATCTGGCAAGCAGTTCAGTCTTTAAATGTAAAAGAAGTGTATCGCCTTATTGTAACATCAACTTCAAATCCAATAAACACAAAATTTGAAGAAGCGGTTTCCCATGCCGAGACTGAAAATCATCAGCATGATCCTGAAGCCTGTCTGAGGATTAAAGAGGCTAGTGAAACAGAGAGTTGTTTCCGCGGTTGGTCTTTATTACACCTAGCATGTCATTCTGGCAGTACATTAATGGTTGAGCTGTTGCTCCAATTTGGTGCTGATATAAACATGCGCGATTATCATGGAAGGACTCCGTTGCACCGCTGCATTTCTAGTGGGAAAAATTCATTGGCTAAGTTTTTACTAAGAAGGGGTGCAAAACCATCAATTAAAGACGCTGGAGGACATACTGTACTTGAAAGAGCAATGGAGTTGGGAGCAATAACTGACGAACAGCTATTTATCTTGCTTGTTGAGTGCCAGTAA 2301 0.4011 MASSFVKLDDSPMFQKQLFFMEDTADELKDRCQNLFKGCKKFMTALGEAHNGENAFADSLEAFGGGYDDPVSVSVGGPVISKFITALRELATFKELLRSQVEHVLIDRLSEFLNVDLQNAKESRRRFDKSVQSYDQSREKFVSLKKNTPEDIVAELEEGLQNSKSSFEKSRFNLVHSLMNIEVKKKYEFLESISAIMDAHLRYFKLGYDLLSQMEPYIHQVLTYAQQSKEVANIEQDKLAKRIQEYRTQTEVENIPMPGADGTQPVGLNSYKNFEAGMQSATKGEIQTVKQGYLLKRSSRMRGDWKRRFFVLDNHGSLYYYRSKGPKPAGFQSYNYSRSSEQNSGMFGRFRSRHSRAASLNEDILGCCTVDLCTSTIKMDAEDTDLRLCFRIISPSKTYTLQAENEADRMDWVNKITGAITTLFNFQFLQQPHYGKLQLQNKNSPTGSSLTSQQEDSNKSLMDDVYSKEVGSVSKILRGVPGNDKCAECSTPEPDWASLNLGILLCIECSGVHRNLGVHISKVRSITLDVKVWEPTILELFNNLGNTFCNSIWEGLLLLGDERVGESNVPLKPRSTDPSQYKEKYIQAKYAEKSLVIREEDIPENPSVSTKIWQAVQSLNVKEVYRLIVTSTSNPINTKFEEAVSHAETENHQHDPEACLRIKEASETESCFRGWSLLHLACHSGSTLMVELLLQFGADINMRDYHGRTPLHRCISSGKNSLAKFLLRRGAKPSIKDAGGHTVLERAMELGAITDEQLFILLVECQ 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02969 766 Gene3D Arfaptin homology (AH) domain/BAR domain 7 253 IPR027267 -
Vivi5g02969 766 SUPERFAMILY ArfGap/RecO-like zinc finger 474 596 IPR037278 -
Vivi5g02969 766 SUPERFAMILY Ankyrin repeat 651 762 IPR036770 -
Vivi5g02969 766 PRINTS HIV Rev interacting protein signature 502 519 IPR001164 GO:0005096
Vivi5g02969 766 PRINTS HIV Rev interacting protein signature 525 546 IPR001164 GO:0005096
Vivi5g02969 766 PRINTS HIV Rev interacting protein signature 483 502 IPR001164 GO:0005096
Vivi5g02969 766 ProSiteProfiles PH domain profile. 287 421 IPR001849 -
Vivi5g02969 766 MobiDBLite consensus disorder prediction 440 459 - -
Vivi5g02969 766 CDD ArfGap 475 590 - -
Vivi5g02969 766 SMART arf_gap_3 471 603 IPR001164 GO:0005096
Vivi5g02969 766 ProSiteProfiles Ankyrin repeat region circular profile. 673 704 - -
Vivi5g02969 766 SUPERFAMILY BAR/IMD domain-like 8 310 IPR027267 -
Vivi5g02969 766 ProSiteProfiles Ankyrin repeat region circular profile. 706 737 - -
Vivi5g02969 766 ProSiteProfiles Ankyrin repeat profile. 673 705 IPR002110 GO:0005515
Vivi5g02969 766 SMART 5bar 13 220 IPR004148 GO:0005515|GO:0005737
Vivi5g02969 766 Coils Coil 229 249 - -
Vivi5g02969 766 SMART ANK_2a 706 735 IPR002110 GO:0005515
Vivi5g02969 766 SMART ANK_2a 673 702 IPR002110 GO:0005515
Vivi5g02969 766 Gene3D - 606 757 IPR036770 -
Vivi5g02969 766 Gene3D - 280 431 IPR011993 -
Vivi5g02969 766 PANTHER CENTAURIN/ARF 3 763 IPR045258 GO:0005096
Vivi5g02969 766 Pfam PH domain 289 420 IPR001849 -
Vivi5g02969 766 CDD PH_ACAP 290 425 - -
Vivi5g02969 766 ProSiteProfiles ARF GTPase-activating proteins domain profile. 471 603 IPR001164 GO:0005096
Vivi5g02969 766 CDD BAR_SFC_plant 16 217 IPR035670 -
Vivi5g02969 766 Pfam Ankyrin repeats (many copies) 675 727 IPR002110 GO:0005515
Vivi5g02969 766 Pfam BAR domain of APPL family 8 230 IPR004148 GO:0005515|GO:0005737
Vivi5g02969 766 Pfam Putative GTPase activating protein for Arf 475 596 IPR001164 GO:0005096
Vivi5g02969 766 Gene3D Arf GTPase activating protein 451 603 IPR038508 -
Vivi5g02969 766 SMART PH_update 288 423 IPR001849 -
Vivi5g02969 766 ProSiteProfiles Ankyrin repeat profile. 706 738 IPR002110 GO:0005515
Vivi5g02969 766 SUPERFAMILY PH domain-like 287 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02969 Vivi-Chr5 118050141 118062061 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02969 481 592 C2H2 Transcription Factor Family AT3G07940 42.478 5.00e-19 86.3