Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02957 ATGCAGATCTTCGTCAAGACTTTAACCGGAAAGACCATCACTCTCGAGGTTGAGAGCAGCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCTGACCAGCAGAGGTTGATTTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACTCTTGCTGATTATAACATTCAAAAGGAATCAACGCTTCACTTGGTCCTGAGGCTCAGAGGAGGAACCATGATTAAAGTGAAGACTTTAACTGGAAAGGAAATTGAAATTGACATTGAGCCAACTGATACAATTGACCGTATCAAGGAACGTGTAGAAGAAAAAGAGGGAATTCCACCAGTGCAGCAGAGGCTCATATATGCTGGTAAACAGCTTGCTGATGACAAAACAGCTAAAGAGTACAACATTGAGGGTGGTTCTGTCCTTCACTTGGTGCTTGCATTGAGGGGTGGTGCTTATTAA 465 0.4538 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKEYNIEGGSVLHLVLALRGGAY 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02957 154 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Vivi5g02957 154 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Vivi5g02957 154 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Vivi5g02957 154 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Vivi5g02957 154 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Vivi5g02957 154 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Vivi5g02957 154 SMART ubq_7 77 148 IPR000626 GO:0005515
Vivi5g02957 154 SMART ubq_7 1 72 IPR000626 GO:0005515
Vivi5g02957 154 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Vivi5g02957 154 CDD Ubl_ubiquitin 1 76 - -
Vivi5g02957 154 Gene3D - 78 154 - -
Vivi5g02957 154 Gene3D - 1 77 - -
Vivi5g02957 154 CDD Ubl_NEDD8 79 152 IPR038738 -
Vivi5g02957 154 PRINTS Ubiquitin signature 53 74 IPR019956 -
Vivi5g02957 154 PRINTS Ubiquitin signature 11 31 IPR019956 -
Vivi5g02957 154 PRINTS Ubiquitin signature 32 52 IPR019956 -
Vivi5g02957 154 PANTHER UBIQUITIN 1 78 - -
Vivi5g02957 154 FunFam Polyubiquitin 3 1 76 - -
Vivi5g02957 154 SUPERFAMILY Ubiquitin-like 78 153 IPR029071 -
Vivi5g02957 154 FunFam NEDD8 protein 77 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02957 Vivi-Chr5 117742471 117746873 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02957 1 76 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 100.000 1.86e-50 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02957 K12158 - gmx:100794152 291.197