Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02950 ATGGGAAGATCACCTTGCTGTGAAAAAGCTCATACTAACAAAGGTGCTTGGACTAAAGAAGAAGACGATAGATTGATTTCTTATATTCGCGCTCATGGTGAAGGCTGCTGGAGATCTCTTCCTAAAGCTGCTGGTTTACTCCGCTGCGGCAAAAGCTGTCGTCTAAGGTGGATTAACTATCTCCGGCCAGACCTTAAACGCGGGAACTTTACGGAAGAAGAAGATGAACTCATTATCAAACTTCATAGTCTTCTTGGTAACAAATGGTCTTTGATAGCGGGAAGATTACCGGGTAGAACAGATAATGAGATAAAGAATTATTGGAATACTCATATTAGAAGAAAGCTTTTGAATAGAGGAATCGACCCTGCTACTCATAGGCCTTTAAACGAGGTTTCTCATTCGCAATCGCAATCTCAATCTCAATCTCATTCTCAAGTTCTTCATCTTCAGAATCAAAATCAGAATCTTAGCCACAATCAAGAAGGTGTAACTATAGCTGTAGCAGCATCTGCTTCAACTACTGCCACTTCTACAGTTATAGCCGCGGCTGCACCCACATCAATTATATCTTTTGCTCCGTCGTCTATTAAACAAGAACAATATCATAATCATTATCATAATCATAGTCATCATAGTTACAGTCATAATCATCAAGAGATGATGATTAAAGGCTCGGTGTTAGAACGGTGTCCGGATTTGAATCTTGAGTTAACAATAAGTCCTCCGCGGCAACAAGAATCAGAAGAACCATTCAAAAGCAGAGAAAGAAACAACAGCAGCAGCAACAATAGTAGCCTCTGTTTTGTATGTAGTTTGGGTTTGCAGAACAGTAAAGATTGTAGCTGTGAAGAAACTGTTGGAAATTCAAACGGTGGAAAAGCACCTGCTTATGATTTCTTGGGCTTGAAAGGTGGTGTTTGGGATTACAAAGGCTTAGAAATGAAATGA 951 0.3985 MGRSPCCEKAHTNKGAWTKEEDDRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEVSHSQSQSQSQSHSQVLHLQNQNQNLSHNQEGVTIAVAASASTTATSTVIAAAAPTSIISFAPSSIKQEQYHNHYHNHSHHSYSHNHQEMMIKGSVLERCPDLNLELTISPPRQQESEEPFKSRERNNSSSNNSSLCFVCSLGLQNSKDCSCEETVGNSNGGKAPAYDFLGLKGGVWDYKGLEMK 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02950 316 Gene3D - 14 66 - -
Vivi5g02950 316 CDD SANT 69 112 IPR001005 -
Vivi5g02950 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vivi5g02950 316 CDD SANT 16 61 IPR001005 -
Vivi5g02950 316 Gene3D - 68 160 - -
Vivi5g02950 316 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vivi5g02950 316 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vivi5g02950 316 MobiDBLite consensus disorder prediction 129 148 - -
Vivi5g02950 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vivi5g02950 316 MobiDBLite consensus disorder prediction 123 148 - -
Vivi5g02950 316 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 245 - -
Vivi5g02950 316 FunFam Myb transcription factor 68 137 - -
Vivi5g02950 316 SMART sant 66 114 IPR001005 -
Vivi5g02950 316 SMART sant 13 63 IPR001005 -
Vivi5g02950 316 MobiDBLite consensus disorder prediction 237 264 - -
Vivi5g02950 316 FunFam MYB-related transcription factor 13 66 - -
Vivi5g02950 316 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vivi5g02950 316 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vivi5g02950 316 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02950 Vivi-Chr5 117556195 117557694 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02950 1 316 MYB Transcription Factor Family AT4G38620 52.439 2.87e-104 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi5g02950 Myb_DNA-binding 2.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02950 K09422 - gmx:780553 358.992