Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02941 ATGACAGTTGAAAAGAGGTTTGTTTTGGTTGGGATTAGAATTGATAGTCAAAGCAGACAGCTTTTAAATTGGGCTCTTGTTAAAGTTGCTGAGCCTGGTGATTGTGTTGTTGCTGTTCATGTAGTTAAAACCAAAAGTTCAGATGATGTTTTGAAAATCAAGAGTATCATTGATGGGTATTTAGAGGTTTATGAAGGCTTGTGTGATGTCAAGAAGATTGGTCTTTCGGCGAAAATCTTAACGGGAAGATCGATTCGAAACATTCTTGTTAGAGAAGCAAAAGACCATGGTGCTTTGGCTCTAGTGGTAGGGGGTAAGTCTGCCACGGCTAAGTATTGCGCCAAACAACTTCCACTAACCATCAATGTTCTGGCCGTCCAAGATTCAAGGATTGTCTTCGGGAGGTGTAACAATAAACTACCACGCGGTAGTTTTATATTGGATCCAAGACCAAGCATAGATTACCCGAGTGACGGAATAATCCAATCTGAAAAGCACAAGTCACGGTCGATATCCATGTTTACAGGTGATCCTTCTGAGCAAAAGCTTGGATGGCCTCTACTTTGCAGAACGCATTCAGAAATCTCACAAAGCTGTCATGAAAGGGACATGTCAGTAGTACAATGGGTAATGACTTTACCAGACCGTTCATCGGAAAATAGTCCTCAATCAACTTCCAGCGACGAAAATCCTTTCGAAAGGAGCACCAGCGACATTCTTGAGGATGAGAGCTTAAAAAATTATTTATCTCCATCTGTTGTGCTACCAAAAGGCCTAGAGGAGATATTAAATGTAAATTCACTCAATTGCAAATGGTTCACCCTTGAGGCTCTTAAGTCTTGCACTAACCAATTCTCTTCAGAAAATTTGATTGGAAAAGGTGGGAGCAACCGTGTGTACAAAGGAGTTCTCTCTGATGGAAAGTCAATTGCAGTTAAAGTATTACGGTCATCAAAAGAAGCCTTGAAAGATTTTACCTTTGAGATGGAAATTATATCCCCGTTGAAACATAAAAACATTTCTCAACTACTTGGAATTTGCATTGAGGACAATAATACGTTAATATCCGTTTATGATTATTACGTCAAAGGCAGCTTAGAGGAAAATCTACATGGAAAGAACAAAGATGGATCAATTTTGTCATGGGAAGTGAGGTTCAATGTAGCTGTTGGAATAGCTGAGGCTCTTGATTACCTACACACAGAAGCCTTGAAGCCTGTTATACACAGAGATGTCAAGTCTTCAAACATTCTTCTTTCCCAAGAATTTGAACCACAGTTGTCTGATTTTGGACTTGCAATATGGGGACCAACAAAAACACCTTTTTTGACACAAGAAGATGTAGTAGGAACATTTGGTTACCTTGCTCCTGAATACTTCATGTATGGAAAAGTCAGTGACAAGATAGATGTTTATGCTTTTGGTGTAGTACTACTTGAACTGATATCAGGTAGGGAACCAATCAGTTCTGAACCTTGCAAAGGACAGGAGAGCTTAGTAGTCTGGGCAAAACCATTAATAGAGAAAGGGGATGTGAAAGGTTTGTTGGACCCGAAGTTAGAAGGGAAGTGTAATGAGACACAATTGCAAAGAATGGTTTTAGCAGCATCTTTATGCATCACACAAGCTGCTAGACTTCGTCCTAAATTTAATCAGATACTGAAGATCCTAAAAGAGGGCGATGAAGTCGAACATTGCTTCAACGAGCATTCAGAAAATGAAGAAAACATTGACGACGAGGTGTATCCACATTCAAGTGCAGAGTTACACCTAACACTTGCATTACTTGGTGTTGATGAAGACAGTACATCATCATGTAGTAGTACAGACCACAGGTATAGTGAGAATTTGAAAGACCAATGGAGCAGGTCTTCAAGTTTTAACTAG 1887 0.3969 MTVEKRFVLVGIRIDSQSRQLLNWALVKVAEPGDCVVAVHVVKTKSSDDVLKIKSIIDGYLEVYEGLCDVKKIGLSAKILTGRSIRNILVREAKDHGALALVVGGKSATAKYCAKQLPLTINVLAVQDSRIVFGRCNNKLPRGSFILDPRPSIDYPSDGIIQSEKHKSRSISMFTGDPSEQKLGWPLLCRTHSEISQSCHERDMSVVQWVMTLPDRSSENSPQSTSSDENPFERSTSDILEDESLKNYLSPSVVLPKGLEEILNVNSLNCKWFTLEALKSCTNQFSSENLIGKGGSNRVYKGVLSDGKSIAVKVLRSSKEALKDFTFEMEIISPLKHKNISQLLGICIEDNNTLISVYDYYVKGSLEENLHGKNKDGSILSWEVRFNVAVGIAEALDYLHTEALKPVIHRDVKSSNILLSQEFEPQLSDFGLAIWGPTKTPFLTQEDVVGTFGYLAPEYFMYGKVSDKIDVYAFGVVLLELISGREPISSEPCKGQESLVVWAKPLIEKGDVKGLLDPKLEGKCNETQLQRMVLAASLCITQAARLRPKFNQILKILKEGDEVEHCFNEHSENEENIDDEVYPHSSAELHLTLALLGVDEDSTSSCSSTDHRYSENLKDQWSRSSSFN 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02941 628 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 254 360 - -
Vivi5g02941 628 FunFam Putative receptor-like serine/threonine-protein kinase 361 574 - -
Vivi5g02941 628 Gene3D Phosphorylase Kinase; domain 1 257 360 - -
Vivi5g02941 628 MobiDBLite consensus disorder prediction 215 235 - -
Vivi5g02941 628 Gene3D Transferase(Phosphotransferase) domain 1 362 574 - -
Vivi5g02941 628 MobiDBLite consensus disorder prediction 215 233 - -
Vivi5g02941 628 ProSitePatterns Serine/Threonine protein kinases active-site signature. 407 419 IPR008271 GO:0004672|GO:0006468
Vivi5g02941 628 CDD USP_Like 8 126 - -
Vivi5g02941 628 PANTHER OS08G0249100 PROTEIN 195 579 IPR046958 -
Vivi5g02941 628 Pfam Protein kinase domain 286 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g02941 628 SUPERFAMILY Protein kinase-like (PK-like) 266 557 IPR011009 -
Vivi5g02941 628 SMART serkin_6 285 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g02941 628 ProSiteProfiles Protein kinase domain profile. 285 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02941 Vivi-Chr5 117416769 117421068 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02941 273 627 Trihelix Transcription Factor Family AT1G70460 40.331 1.48e-73 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vivi5g02941 Pkinase 8.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02941 - - tpra:123913065 996.112