Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02897 ATGGGTTTTCTTTTTCCTAGTATGATCAAAAGAGCATCCTCTTCAAAAGCTATGGGCATTCCAAGAGGATATGTTGCTGTATATGTTGGAGAGAAACAGAAGCGATTTGTGATCCCAATATCATACTTGAACCAACCGTCGTTTCAAGACTTGCTGAGTCAAGCCGAGGAAGAGTTTGGATACGATCATCCGATGGGTGGCCTCACGATTCCTTGCACAGAAGATGTCTTCCAAAATACAAATACAACTATGGGCTTTCGTTTCTCTGGTATCATCAGAAAGGCATCATTTGCAGCAAACCGAGCAGCTTCGAAAACTGCAGACATGCCAAAGGGATATCTTGCCGTATATGTTGGAGAAAAACAAAAGCGGTGTGTGATCCCCATATCATACTTGAACCAACCATCGTTTCAAGACTTGTTGAGCCAAGCTAAGGAAGAGTTTGGATATGATCATCCAATGGGTGGCCTCACCATTCCTTGTACCGAAGATGTCTTTCAAAATATAACTTCAGGCTTTAATGGGCTATGA 531 0.4237 MGFLFPSMIKRASSSKAMGIPRGYVAVYVGEKQKRFVIPISYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPCTEDVFQNTNTTMGFRFSGIIRKASFAANRAASKTADMPKGYLAVYVGEKQKRCVIPISYLNQPSFQDLLSQAKEEFGYDHPMGGLTIPCTEDVFQNITSGFNGL 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02897 176 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 8 81 IPR003676 GO:0009733
Vivi5g02897 176 Pfam Auxin responsive protein 12 79 IPR003676 GO:0009733
Vivi5g02897 176 Pfam Auxin responsive protein 97 170 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02897 Vivi-Chr5 116829934 116833154 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02897 20 78 Calmodulin-binding Proteins AT3G43120 50.847 4.63e-16 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02897 - K14488 pcin:129286196 232.646
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g02897 5 116829934 116833154 Vivi5g02897 5 116829934 116833154 ECH