Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02896 ATGGGTTTCGGCATAACAAGTATTATCAGAAGGGCATCATTTTCCAGAACCCAAGGATCTACCAAGGGAATTGAAGTTCCTAAAGGCTATCTCGCCGTTTATGTTGGAGACAAAATGAGGAAGTTTACGATTCCGGTATCATACTTGAACCAACCATTATTTCAAGAATTATTAAATGTAGCAGAAGAAGAATTTGGATACGATCATCCCATGGGTGGTCTCACAATTCCTCAGTATCTATTTCTCATCCATTCCTTTAACATAAAACAAACAATGGTTTTCCGCAGTATTATCAGAAGAACATCATTTTCCAGAACCCAAGGATCTACCAAGGGATTTGAAGTCCCTAAGGGCTATCTCGCAGTCTATGTTGGAGATAAAATGAAGCGGTTTGTGATTCCGGTATCATACTTGAACCAATCATTGTTTCAAGAATTGTTAAATGAAGCTGAAGAAGAATTTGGATATGATCATCCAATGGGAGGTCTCACAATTCCATGCAGTGAGGATGAATTCTTAAACCTCACGTCTCGCTTGAACTGA 543 0.3886 MGFGITSIIRRASFSRTQGSTKGIEVPKGYLAVYVGDKMRKFTIPVSYLNQPLFQELLNVAEEEFGYDHPMGGLTIPQYLFLIHSFNIKQTMVFRSIIRRTSFSRTQGSTKGFEVPKGYLAVYVGDKMKRFVIPVSYLNQSLFQELLNEAEEEFGYDHPMGGLTIPCSEDEFLNLTSRLN 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02896 180 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 107 179 IPR003676 GO:0009733
Vivi5g02896 180 Pfam Auxin responsive protein 100 178 IPR003676 GO:0009733
Vivi5g02896 180 Pfam Auxin responsive protein 12 77 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02896 Vivi-Chr5 116828686 116831795 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02896 25 77 Calmodulin-binding Proteins AT3G43120 60.377 9.92e-16 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02896 - K14488 vvo:131602130 344.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g02896 5 116828686 116831795 Vivi5g02896 5 116828686 116831795 ECH