Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02893 ATGGGTTTCGGCATAACAAGTATTATCAGAAGGGCATCATTTTCCAGAACCCAAGGATCTACCAAGGGAATTGAAGTTCCTAAAGGCTATCTCGCCGTCTATGTTGGAGACAAAATGAGGAAGTTTACGATTCCGGTATCATACTTGAACCAACCATTATTTCAAGAATTATTAAATCAAGCAGAAGAAGAATTCGGATATGATCATCCAATGGGTGGTCTCACAATTCCTCAGTATATATTTCTCATCCACTCCTTTAACATAAAAGAAACAATGGGTTTCCGCAGTATTATCAGAAAAACATCATTTTCCAAAACCCAAGGATCTACCAAAGGACTTGAAGTCCCTAAGGGCTACCTCGCAGTCTATGTTGGAGATAAAATGAAGCGGTTTGTGATTCCGGTATCATACTTGAACCAATCATTGTTTCAAGAATTGTTAAATGAAGCAGAAGAAGAATTTGGATATGATCATCCAATGGGTGGTCTCACAATTCCATGCAGTGAGGATGAATTCTTAAGCCTCACGTCTCGCTTGAATTGA 543 0.3886 MGFGITSIIRRASFSRTQGSTKGIEVPKGYLAVYVGDKMRKFTIPVSYLNQPLFQELLNQAEEEFGYDHPMGGLTIPQYIFLIHSFNIKETMGFRSIIRKTSFSKTQGSTKGLEVPKGYLAVYVGDKMKRFVIPVSYLNQSLFQELLNEAEEEFGYDHPMGGLTIPCSEDEFLSLTSRLN 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02893 180 Pfam Auxin responsive protein 12 77 IPR003676 GO:0009733
Vivi5g02893 180 Pfam Auxin responsive protein 101 178 IPR003676 GO:0009733
Vivi5g02893 180 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 106 179 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02893 Vivi-Chr5 116822128 116825593 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02893 25 77 Calmodulin-binding Proteins AT3G43120 60.377 2.61e-16 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02893 - K14488 vvo:131602130 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g02893 5 116822128 116825593 Vivi5g02893 5 116822128 116825593 ECH