Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02890 ATGTCACCGTCACCGTTACCGTCAATGATTACCGGAAAAAGCAGTAAAATCCGCCGCATTGTGCGGCTCCGGCAAATGCTTCTCCGTTGGAGAAAGAAAGCAAGATTAGCAACCGATGTGCCGGAAGGACACGTGGCGGTTTGCGTGGGTCCTACGATGAGGAGGTTCGTGGTTCGCGCTAGCTACTTGAATCACCCGATCTTCAAGAAGCTTCTGATGCAGGCGGAGGAGGAGTACGGTTTTTGTAACCATGGACCGCTTGCTATACCGTGTGATGAGTTGGTTTTTGAAGAGCTTCTTCGGGTTATGGCCCGACCCGAACCGAGATTATCGACGATTGAGGATTTTCAGAATCGTTGCCACGTGGATGTGAGAAAGAGAAGTAGTAGTAGTAGTGGTTTTGAGTTTGTAGGAGAATCGAGGCCGTTGCTTCATGATGATCTAATTTGCTGA 453 0.4923 MSPSPLPSMITGKSSKIRRIVRLRQMLLRWRKKARLATDVPEGHVAVCVGPTMRRFVVRASYLNHPIFKKLLMQAEEEYGFCNHGPLAIPCDELVFEELLRVMARPEPRLSTIEDFQNRCHVDVRKRSSSSSGFEFVGESRPLLHDDLIC 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02890 150 Pfam Auxin responsive protein 23 102 IPR003676 GO:0009733
Vivi5g02890 150 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 29 99 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02890 Vivi-Chr5 116704514 116705372 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02890 12 144 Calmodulin-binding Proteins AT4G34750 48.322 1.83e-41 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02890 K14488 - gmx:100795345 198.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g02890 5 116704514 116705372 Vivi5g02890 5 116704514 116705372 ECH