Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02867 ATGAACAGGTCTAATTTTCTCGGCACTAAGTTCACGATCTTGGACGGTCCTCCACATGATTCTTCGCTTCCATTGAGTTGTAAGTTGCATCAAAAGGTCTATCGGAAACAAGTACATCCGAGAGCTGCTTCTGCTAACTTTAAAGTAGCAACAATATCTTATGAACTTAATCTTCTTCGTACGAGAGGTCCAATGCGAATGCGGTGTACAATGCACTTAATTCCGATATCTTCAGTCCAAGAAGGAGGGACTGCTCCTACTCCCATGGAGTTTAGCAATTGTCTTAATGAGCGAGAATCTCCAAAAGGAAAGAAGCCAGAAGTTGTTGAGTTTGGCTCAACTTGCACTGATTTTGCAAGAGAACCACTGACTTTGAAAAACAAAGCACCTAGATGGCATGAACTACTTCAATGTTGGTGCTTGAATTTCAAGGGACGGGTTTCGGTGGCTTCGGTTAAGAATTTCCAGCTTGTAGCAGCTGCAGAACCTTGCCATAACGTTTCTGAACCTTGA 513 0.4288 MNRSNFLGTKFTILDGPPHDSSLPLSCKLHQKVYRKQVHPRAASANFKVATISYELNLLRTRGPMRMRCTMHLIPISSVQEGGTAPTPMEFSNCLNERESPKGKKPEVVEFGSTCTDFAREPLTLKNKAPRWHELLQCWCLNFKGRVSVASVKNFQLVAAAEPCHNVSEP 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02867 170 PANTHER TUBBY-RELATED 3 161 - -
Vivi5g02867 170 ProSitePatterns Tub family signature 1. 143 156 IPR018066 -
Vivi5g02867 170 Gene3D Tubby Protein; Chain A 1 168 IPR025659 -
Vivi5g02867 170 PRINTS Tubby superfamily signature 46 73 IPR000007 -
Vivi5g02867 170 PRINTS Tubby superfamily signature 143 159 IPR000007 -
Vivi5g02867 170 PRINTS Tubby superfamily signature 125 142 IPR000007 -
Vivi5g02867 170 Pfam Tub family 3 160 IPR000007 -
Vivi5g02867 170 MobiDBLite consensus disorder prediction 83 106 - -
Vivi5g02867 170 SUPERFAMILY Tubby C-terminal domain-like 3 163 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02867 Vivi-Chr5 115843832 115844344 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02867 3 170 TUB Transcription Factor Family AT1G47270 52.874 4.65e-49 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vivi5g02867 Tub 1e-42 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02867 K19600 - vvo:131605217 356.295