Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02852 ATGGAAATTGTGGTGGCGGAAGCGTTGAAACCAAGCTTGAGGACAGAGTCTGTTTTTTCGCAAACTATTAGCGAGGATATTTTGTGTTTGAACGCGAATAACGTTGTTGTCGGTGAAGATTTCTCTGTCGACGACTTGCTTGATTTTTCAAACGGCAAAGAGATTGATAATTACGAGGAGGAAGAAGAAGAACATGAGAAAAACAGCACCAGTTCAGGTTCTGAGCATGACCGAACAGAAGACGACGGAAATTCCAATTCCTTAACGTTTTCCGGTACCGGCGAGTCTGACTCCATTTTTGCCGGCGAATTAGCAGTTCCGGCTGATGATGTTGCGGATTTGGAATGGGTCTCTCACTTTGTGGACGACTCACTGCCGGAGCTTTCTCTATTGTATCCAGTTCAAGCCCGGGTTGAACCGGAACCTAGACCGGGTCTAAGCCCAAGCCCAAGCCCAACCAAAGCTCCTTCTCATGTCATGTTAATCCGGAGAAAGCCTAGAACTAGCAAGACTAGAAGGCCTAACTCTAACACGTGGTCCTTCAACCCTATTCTGTGTAAAGCAAAGAAGCAGAGGAAAAAGCCCGAGGCTCAGACAGGTGGAACTCAGTTTCAGAGACGGTGTAGCCATTGCCAGGTGCAGAAAACGCCACAGTGGAGAACCGGTCCGCTTGGACCGAAAACACTATGTAACGCTTGTGGTGTTCGGTATAAGTCCGGTAGGCTTTTCCCGGAATATAGACCGGCTTCAAGCCCGACGTTCTCCGGGAATATTCACTCGAACAGCCACCGTAAGGTTCTGGAGATGAGGCGGAGGAAGGAGACTGAAGAGGCTGTATCCGGTCTGGACCGGAATCAAATGGCGTCGAGTTGGTGA 876 0.4909 MEIVVAEALKPSLRTESVFSQTISEDILCLNANNVVVGEDFSVDDLLDFSNGKEIDNYEEEEEEHEKNSTSSGSEHDRTEDDGNSNSLTFSGTGESDSIFAGELAVPADDVADLEWVSHFVDDSLPELSLLYPVQARVEPEPRPGLSPSPSPTKAPSHVMLIRRKPRTSKTRRPNSNTWSFNPILCKAKKQRKKPEAQTGGTQFQRRCSHCQVQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPEYRPASSPTFSGNIHSNSHRKVLEMRRRKETEEAVSGLDRNQMASSW 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02852 291 ProSiteProfiles GATA-type zinc finger domain profile. 202 238 IPR000679 GO:0006355|GO:0043565
Vivi5g02852 291 PANTHER GATA TRANSCRIPTION FACTOR 29 275 - -
Vivi5g02852 291 Pfam GATA zinc finger 208 241 IPR000679 GO:0006355|GO:0043565
Vivi5g02852 291 ProSitePatterns GATA-type zinc finger domain. 208 233 IPR000679 GO:0006355|GO:0043565
Vivi5g02852 291 MobiDBLite consensus disorder prediction 57 93 - -
Vivi5g02852 291 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 204 265 - -
Vivi5g02852 291 PIRSF Txn_fac_GATA_plant 15 290 IPR016679 GO:0003677|GO:0005634|GO:0045893
Vivi5g02852 291 MobiDBLite consensus disorder prediction 271 291 - -
Vivi5g02852 291 FunFam GATA transcription factor 197 285 - -
Vivi5g02852 291 Gene3D - 201 253 IPR013088 GO:0006355|GO:0008270
Vivi5g02852 291 MobiDBLite consensus disorder prediction 139 158 - -
Vivi5g02852 291 SMART GATA_3 202 252 IPR000679 GO:0006355|GO:0043565
Vivi5g02852 291 MobiDBLite consensus disorder prediction 64 83 - -
Vivi5g02852 291 CDD ZnF_GATA 207 264 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02852 Vivi-Chr5 115620778 115622408 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02852 40 278 C2C2-Gata Transcription Factor Family AT4G36240 44.922 9.29e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vivi5g02852 GATA 3.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02852 - - gmx:100776188 367.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g02852 5 115620778 115622408 Vivi5g02852 5 115620778 115622408 ECH
Vivi3g00984 3 16369482 16370901 Vivi5g02852 5 115620778 115622408 ECH