Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02815 ATGAATCATTTTCAGCAAGACAAACCATCCTTCTTTGCTATCATCAAAGGCAATATCAACCAAATGAAAGTTCCGCAGAAGATTGTTGTGAATTTAGGTGAAGAGTTGAGAAAAAATGAATCAATTATTCTGATAGGCTCTTCTGGTGAGAAGTGGCAAGTGAGTATTATGAAGAATGAAAACGACATGTATCTGCAAAACATCGGTTGGGAGAAATTTATGAAAGACAACTCAGTGAAGAATTACGAGGTCTTGTGTTTCACATACAATGGAGAGAACAGATTCAAGGTGCAAATTTTCGGTAAGAACGGATTAGAGAGGCCAAGCTTCAAGAAAGCAGAAGTTACTGCAGAAGCTCCAACTACGGTGAAGAGAAAGAGGGGTAGAGCAGGCTTGAAGAAAGAAGAAGAAGTTGCTGCAGAAGATCAAAGTGCGGTCAAGAAAAAGAGAGGTAGACCAAGCTTGAAGAAAGAAGAAAAAGTTGCTGCAGAAGCTACAAGTGTGGTCAAGAGAAAGAGAGGTAGACCGAGAAAAAATCCGGCTGCTGAGACAGTAAGTGGCAACAAAGAAAAAGGAAAAGAGGAAGCTGCAGCAACACTAGTGGCTAAGAAAGAAAAAGAAAAAGAAGGTCAGGAAACAATTGTAGCTAGGAGAAAAATTGATGAACCAGGAAAAAGTCTTGCTGCTAAGAGAGTAAGTGTTAAAAATGAAAAAGAGGAAGCTGTTGAAAAAACAATGGAGACTAAGAGAAACAAGGGAGGACCAAGAAAAAGTGCTCCTGCTCCTCCTCCTCCTCCTGCTGTTATTATTATAATAGACTGA 822 0.3966 MNHFQQDKPSFFAIIKGNINQMKVPQKIVVNLGEELRKNESIILIGSSGEKWQVSIMKNENDMYLQNIGWEKFMKDNSVKNYEVLCFTYNGENRFKVQIFGKNGLERPSFKKAEVTAEAPTTVKRKRGRAGLKKEEEVAAEDQSAVKKKRGRPSLKKEEKVAAEATSVVKRKRGRPRKNPAAETVSGNKEKGKEEAAATLVAKKEKEKEGQETIVARRKIDEPGKSLAAKRVSVKNEKEEAVEKTMETKRNKGGPRKSAPAPPPPPAVIIIID 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02815 273 MobiDBLite consensus disorder prediction 224 254 - -
Vivi5g02815 273 SMART AT_hook_2 170 182 IPR017956 GO:0003677
Vivi5g02815 273 SMART AT_hook_2 124 136 IPR017956 GO:0003677
Vivi5g02815 273 SMART AT_hook_2 147 159 IPR017956 GO:0003677
Vivi5g02815 273 Gene3D - 2 104 IPR015300 -
Vivi5g02815 273 SMART B3_2 11 103 IPR003340 GO:0003677
Vivi5g02815 273 MobiDBLite consensus disorder prediction 257 273 - -
Vivi5g02815 273 MobiDBLite consensus disorder prediction 116 149 - -
Vivi5g02815 273 Pfam B3 DNA binding domain 18 102 IPR003340 GO:0003677
Vivi5g02815 273 CDD B3_DNA 9 100 IPR003340 GO:0003677
Vivi5g02815 273 MobiDBLite consensus disorder prediction 155 170 - -
Vivi5g02815 273 ProSiteProfiles B3 DNA-binding domain profile. 7 103 IPR003340 GO:0003677
Vivi5g02815 273 PRINTS AT-hook-like domain signature 247 257 IPR017956 GO:0003677
Vivi5g02815 273 PRINTS AT-hook-like domain signature 147 157 IPR017956 GO:0003677
Vivi5g02815 273 PRINTS AT-hook-like domain signature 168 179 IPR017956 GO:0003677
Vivi5g02815 273 MobiDBLite consensus disorder prediction 116 196 - -
Vivi5g02815 273 PANTHER B3 DOMAIN-CONTAINING 2 207 - -
Vivi5g02815 273 SUPERFAMILY DNA-binding pseudobarrel domain 4 104 IPR015300 -
Vivi5g02815 273 MobiDBLite consensus disorder prediction 224 273 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02815 10 234 REM Transcription Factor Family AT5G09780 26.250 3.36e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi5g02815 B3 1.6e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02815 - - vvo:131607084 506.908