Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02797 ATGCTACATTGTTTCAGTGAAGGAACTTGCTATATATATGGAGCTAGGATCCAACCTTTCAGGTTTTTCATATGCTTAATATCATTTTTTTTTATTTCAATATCAATTTCAAGTTTGAACATGGAAGATCAATTTTCTTCAAAGGAGAAAGGAATTAGCTTCTGGACACAATTGGATAATGGAATGAAAAGTTCAACAGCTTCAGATGACATGTTTAACAACATCTCTGAGCTGATGAACTTTGACAGCTATGCCGGTTGGTGCAACGGCTCGTCGTCCTCGATATCAGATCAAACTCTAACTAATGATCTTTCATCATTTTCATATTCACCTCATGATGGATTGAATTTAGTTGAACATGTTGATGGTTCATTTTTCATGACAGAAATTGGTGGAAATTACAATGTTATGGATAGTGAAAAAGTACTATTACAACAAATGGAAACTCAACTTGAGTTCTTAGATAATGAAAATGAAACAAATAATAACAATAATCATAATTTAGATTCATTTGATATGTGCAATTACATGATATCGAAATCGCCGAGCTGGTCACTTGATGAGAGAATGATGAATGCTTTATCATTCTTTAAGGAATCAGCTGGTGGAGGAATATTGGCACAAGTTTGGGTACCGATAAAATATGGCGACGAATTCGTCTTAACTACTAGTGATCAACCATATTTGTTAGACCAAAAGCTTGCAGGTTATCGCGAAGTGTCGAGGTCATTTACGTTTTCTGCGGAAATGAAAACGGGAACTTATTGTCCTGGACTCCCCGGCCGCGTGTATAACTCGCATGTTCCTGAATGGACCTCTAACATTGGTTACTATCATAAATCTGAGTATTTGAGACTAGATCATGCTATTAGTCACGAGGTTCGCGGTTCCATTGCTCTCCCTATATCTGATATGCACTCTGAAGTTTCGTGTAGTGCTGTACTAGAACTTGTTACTACAAAGGAAAAATCGAATTTCGACAAAGAGTTAGAATTTGTTTCTCATGCACTTCAGCGTGTGAATTTAAGGACTATTACGCCTCCACGACTACTTCCACAGTGTGTATCGAACAACAAAAGAGCTGCATTAACCGAGATAACGGATATATTAAGAGCTGTTTGTCATGCACATAGATTACCACTAGCACTGACATGGATTCCGTGTTGTTATACCGAAGGAAAAGGAGAAGATTCTGAGAAAATACGAATTAAGGAAGGCCATACAAAAAGTTTTGATGAAAAATGTGTACTATGTATTGAAGAATCGGCTTGTTATATAAATGATAAAACGGTAGGAGGATTTGTTCACGCGTGTTCTGAACATCATCTTGAGGAAGGACAAGGTATATCTGGAAAAGCTCTTCAATCAAATCATCCATTTTTCTATACCGACGTGAAGTCTTATGATATTAGTGAGTATCCGCTTGTTCATCACGCGCGAAAATATAACTTGAATGCCGCGGTTGCAACTAGGCTAAGAAGTACTTATACGAACGATGACGATTACGTGTTAGAATTCTTTCTTCCTATCAACATGATAGGGAGTTCAGAACAACAGCTTTTATTAGACAATTTGTCAGATACTATGAGGAGAATCTGTAAGAGTTTGAGGACAGTTTCAGAAGCTGAACTAAGAGGGTTAGAAGGTTCTCAAGATCGGTTTCGTAAGGAAGATGTCTCGAGTTTTTTTCCAATGTCCAGGGGAAGCTCTCAGATAGCATTCACAAGTGAAGATCATGATTTATTTCAGATGTCATTGAATGAAATTAACCTAAAGAATAATGGAAACCAAGCTACTCATAGTCAGGCATTAAATGGATCAAGAAAGCTGGCTGAAAAAAAGAGAAGTGCGGTAGAGAAGAACGTTAGCTTGAGTGTTCTGCAGCAATACTTTTCTGGTAGTCTGAAGGATGCTGCAAAAAAGATTGGAGTTTGTCCAACAACTCTGAAGAGGATATGCAGGCAACACGGAATTTCAAGATGGCCATCGCGCAAGATAAATAAAGTGAACCGTTCGTTGAAGAAAATACAAACTGTTCTTGATTCTGTCCAAGGAGTGGAAGGAGTGTTGAAATTTGATCCACACACTGGTGGATTTGTTGCTGGAGGATCAATCATCCAACAGATCGGTGGTACACATAATAAAACTCACATGTTTCCTGAGAAAATCTCGGTAGAGAACTCGGCCGTTAAGTTAGAGGATGATGGTGTTCTTATTTCAAATTTATGCGAGGAAGAATTGAAGAAAGATGATGTTTCTTCTGTTGACTGTATTCCAGAATCAACATCATGGCTTTGTCCTAAACAAAACTCTATAGGTTCTGTTCTTGAGATAGAGGAAGATCAATGCGATTTGAACAATAGTAGTTTGCATGATATTAACTCTAATAGTTCATTCACATTGATTGAACTTGGTTTGGATGAAGGAAAAGGAGTTGATGAACAAAACAACCCTACCTCTTCAAGCATGACAGATTCATCCAATGCCTCTGGACCAATGATGCATGGAAGTTCATCAGGCTCTCAAAGCATTGAGAACCAAAAGCACTCAAAAGTCAATTCAGTTTGTGTTGACAGCGAGTCGAAATTCGCTGTCAAAGCTAGCTATAGAGGTGATACTATTCGTTTCAAGTTTGATCCATGTGTAGGTTGTTTTCAACTATATGAAGAAGTTGCAACTAGGTTTAAGTTACAAAATGGTTCGTTTCAACTCAAGTATCTAGATGATGAAGAGGAATGGGTGATGTTGGTGAATGACTCAGATTTGAAGGAATGTGTGGAAGTTTTGAGTGATATTGGCTCACAATGTGTGAAGTTACTTGTTTGTGAAATACATGGCATTAATAACAGTTGA 2853 0.3764 MLHCFSEGTCYIYGARIQPFRFFICLISFFFISISISSLNMEDQFSSKEKGISFWTQLDNGMKSSTASDDMFNNISELMNFDSYAGWCNGSSSSISDQTLTNDLSSFSYSPHDGLNLVEHVDGSFFMTEIGGNYNVMDSEKVLLQQMETQLEFLDNENETNNNNNHNLDSFDMCNYMISKSPSWSLDERMMNALSFFKESAGGGILAQVWVPIKYGDEFVLTTSDQPYLLDQKLAGYREVSRSFTFSAEMKTGTYCPGLPGRVYNSHVPEWTSNIGYYHKSEYLRLDHAISHEVRGSIALPISDMHSEVSCSAVLELVTTKEKSNFDKELEFVSHALQRVNLRTITPPRLLPQCVSNNKRAALTEITDILRAVCHAHRLPLALTWIPCCYTEGKGEDSEKIRIKEGHTKSFDEKCVLCIEESACYINDKTVGGFVHACSEHHLEEGQGISGKALQSNHPFFYTDVKSYDISEYPLVHHARKYNLNAAVATRLRSTYTNDDDYVLEFFLPINMIGSSEQQLLLDNLSDTMRRICKSLRTVSEAELRGLEGSQDRFRKEDVSSFFPMSRGSSQIAFTSEDHDLFQMSLNEINLKNNGNQATHSQALNGSRKLAEKKRSAVEKNVSLSVLQQYFSGSLKDAAKKIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGVLKFDPHTGGFVAGGSIIQQIGGTHNKTHMFPEKISVENSAVKLEDDGVLISNLCEEELKKDDVSSVDCIPESTSWLCPKQNSIGSVLEIEEDQCDLNNSSLHDINSNSSFTLIELGLDEGKGVDEQNNPTSSSMTDSSNASGPMMHGSSSGSQSIENQKHSKVNSVCVDSESKFAVKASYRGDTIRFKFDPCVGCFQLYEEVATRFKLQNGSFQLKYLDDEEEWVMLVNDSDLKECVEVLSDIGSQCVKLLVCEIHGINNS 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02797 950 PANTHER PROTEIN NLP8 140 943 IPR045012 GO:0003700
Vivi5g02797 950 MobiDBLite consensus disorder prediction 813 844 - -
Vivi5g02797 950 MobiDBLite consensus disorder prediction 810 844 - -
Vivi5g02797 950 ProSiteProfiles PB1 domain profile. 862 944 IPR000270 GO:0005515
Vivi5g02797 950 Pfam RWP-RK domain 621 669 IPR003035 -
Vivi5g02797 950 SMART PB1_new 862 944 IPR000270 GO:0005515
Vivi5g02797 950 SUPERFAMILY CAD & PB1 domains 858 946 - -
Vivi5g02797 950 ProSiteProfiles RWP-RK domain profile. 608 689 IPR003035 -
Vivi5g02797 950 Pfam PB1 domain 863 941 IPR000270 GO:0005515
Vivi5g02797 950 Gene3D - 858 942 - -
Vivi5g02797 950 Coils Coil 137 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02797 Vivi-Chr5 114686808 114690436 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02797 41 944 NLP Transcription Factor Family AT2G43500 48.075 0.0 775
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vivi5g02797 PB1 8.5e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02797 - - aprc:113864503 1195.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g07402 2 218242031 218249130 Vivi5g02797 5 114686808 114690436 PCT