Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02796 ATGGAAGATCAATTTTCTTCAAAGGAGAAAGGAATTAGCTTCTGGACACAATTGGATAATGGAATGAAAAGTTCAACAGCTTCAGATGACATGTTTAACAACATCTCTGAGCTGATGAACTTTGACAGCTATGCCGGTTGGTGCAACGGCTCGTCGTCCTCGATATCAGATCAAACTCTAACTAATGATCTTTCATCATTTTCATATTCACCTCATGATGGATTGAATTTAGTTGAACATGTTGATGGTTCATTTTTCATGACAGAAATTGGTGGAAATTACAATGTTATGGATAGTGAAAAAGTACTATTACAACAAATGGAAACTCAACTTGAGTTCTTAGATAATGAAAATGAAACAAATAATAACAATAATCATAATTTAGATTCATTTGATATGTGCAATTACATGATATCGAAATCGCCGAGCTGGTCACTTGATGAGAGAATGATGAATGCTTTATCATTCTTTAAGGAATCAGCTGGTGGAGGAATATTGGCACAAGTTTGGGTACCGATAAAATATGGCGACGAATTCGTCTTAACTACTAGTGATCAACCATATTTGTTAGACCAAAAGCTTGCAGGTTATCGCGAAGTGTCGAGGTCATTTACGTTTTCTGCGGAAATGAAAACGGGAACTTATTGTCCTGGACTCCCCGGCCGCGTGTATAACTCGCATGTTCCTGAATGGACCTCTAACATTGGTTACTATCATAAATCTGAGTATTTGAGACTAGATCATGCTATTAGTCACGAGGTTCGCGGTTCCATTGCTCTCCCTATATCTGATATGCACTCTGAAGTTTCGTGTAGTGCTGTACTAGAACTTGTTACTACAAAGGAAAAATCGAATTTCGACAAAGAGTTAGAATTTGTTTCTCATGCACTTCAGCGTGTGAATTTAAGGACTATTACGCCTCCACGACTACTTCCACAGTGTGTATCGAACAACAAAAGAGCTGCATTAACCGAGATAACGGATATATTAAGAGCTGTTTGTCATGCACATAGATTACCACTAGCACTGACATGGATTCCGTGTTGTTATACCGAAGGAAAAGGAGAAGATTCTGAGAAAATACGAATTAAGGAAGGCCATACAAAAAGTTTTGATGAAAAATGTGTACTATGTATTGAAGAATCGGCTTGTTATATAAATGATAAAACGGTAGGAGGATTTGTTCACGCGTGTTCTGAACATCATCTTGAGGAAGGACAAGGTATATCTGGAAAAGCTCTTCAATCAAATCATCCATTTTTCTATACCGACGTGAAGTCTTATGATATTAGTGAGTATCCGCTTGTTCATCACGCGCGAAAATATAACTTGAATGCCGCGGTTGCAACTAGGCTAAGAAGTACTTATACGAACGATGACGATTACGTGTTAGAATTCTTTCTTCCTATCAACATGATAGGGAGTTCAGAACAACAGCTTTTATTAGACAATTTGTCAGATACTATGAGGAGAATCTGTAAGAGTTTGAGGACAGTTTCAGAAGCTGAACTAAGAGGGTTAGAAGGTTCTCAAGATCGGTTTCGTAAGGAAGATGTCTCGAGTTTTTTTCCAATGTCCAGGGGAAGCTCTCAGATAGCATTCACAAGTGAAGATCATGATTTATTTCAGATGTCATTGAATGAAATTAACCTAAAGAATAATGGAAACCAAGCTACTCATAGTCAGGCATTAAATGGATCAAGAAAGCTGGCTGAAAAAAAGAGAAGTGCGGTAGAGAAGAACGTTAGCTTGAGTGTTCTGCAGCAATACTTTTCTGGTAGTCTGAAGGATGCTGCAAAAAAGATTGGAGTTTGTCCAACAACTCTGAAGAGGATATGCAGGCAACACGGAATTTCAAGATGGCCATCGCGCAAGATAAATAAAGTGAACCGTTCGTTGAAGAAAATACAAACTGTTCTTGATTCTGTCCAAGGAGTGGAAGGAGTGTTGAAATTTGATCCACACACTGGTGGATTTGTTGCTGGAGGATCAATCATCCAACAGATCGGTGGTACACATAATAAAACTCACATGTTTCCTGAGAAAATCTCGGTAGAGAACTCGGCCGTTAAGTTAGAGGATGATGGTGTTCTTATTTCAAATTTATGCGAGGAAGAATTGAAGAAAGATGATGTTTCTTCTGTTGACTGTATTCCAGAATCAACATCATGGCTTTGTCCTAAACAAAACTCTATAGGTTCTGTTCTTGAGATAGAGGAAGATCAATGCGATTTGAACAATAGTAGTTTGCATGATATTAACTCTAATAGTTCATTCACATTGATTGAACTTGGTTTGGATGAAGGAAAAGGAGTTGATGAACAAAACAACCCTACCTCTTCAAGCATGACAGATTCATCCAATGCCTCTGGACCAATGATGCATGGAAGTTCATCAGGCTCTCAAAGCATTGAGAACCAAAAGCACTCAAAAGTCAATTCAGTTTGTGTTGACAGCGAGTCGAAATTCGCTGTCAAAGCTAGCTATAGAGGTGATACTATTCGTTTCAAGTTTGATCCATGTGTAGGTTGTTTTCAACTATATGAAGAAGTTGCAACTAGGTTTAAGTTACAAAATGGTTCGTTTCAACTCAAGTATCTAGATGATGAAGAGGAATGGGTGATGTTGGTGAATGACTCAGATTTGAAGGAATGTGTGGAAGTTTTGAGTGATATTGGCTCACAATGTGTGAAGTTACTTGTTTGTGAAATACATGGCATTAATAACAGTTGA 2733 0.3802 MEDQFSSKEKGISFWTQLDNGMKSSTASDDMFNNISELMNFDSYAGWCNGSSSSISDQTLTNDLSSFSYSPHDGLNLVEHVDGSFFMTEIGGNYNVMDSEKVLLQQMETQLEFLDNENETNNNNNHNLDSFDMCNYMISKSPSWSLDERMMNALSFFKESAGGGILAQVWVPIKYGDEFVLTTSDQPYLLDQKLAGYREVSRSFTFSAEMKTGTYCPGLPGRVYNSHVPEWTSNIGYYHKSEYLRLDHAISHEVRGSIALPISDMHSEVSCSAVLELVTTKEKSNFDKELEFVSHALQRVNLRTITPPRLLPQCVSNNKRAALTEITDILRAVCHAHRLPLALTWIPCCYTEGKGEDSEKIRIKEGHTKSFDEKCVLCIEESACYINDKTVGGFVHACSEHHLEEGQGISGKALQSNHPFFYTDVKSYDISEYPLVHHARKYNLNAAVATRLRSTYTNDDDYVLEFFLPINMIGSSEQQLLLDNLSDTMRRICKSLRTVSEAELRGLEGSQDRFRKEDVSSFFPMSRGSSQIAFTSEDHDLFQMSLNEINLKNNGNQATHSQALNGSRKLAEKKRSAVEKNVSLSVLQQYFSGSLKDAAKKIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGVLKFDPHTGGFVAGGSIIQQIGGTHNKTHMFPEKISVENSAVKLEDDGVLISNLCEEELKKDDVSSVDCIPESTSWLCPKQNSIGSVLEIEEDQCDLNNSSLHDINSNSSFTLIELGLDEGKGVDEQNNPTSSSMTDSSNASGPMMHGSSSGSQSIENQKHSKVNSVCVDSESKFAVKASYRGDTIRFKFDPCVGCFQLYEEVATRFKLQNGSFQLKYLDDEEEWVMLVNDSDLKECVEVLSDIGSQCVKLLVCEIHGINNS 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02796 910 MobiDBLite consensus disorder prediction 773 804 - -
Vivi5g02796 910 ProSiteProfiles PB1 domain profile. 822 904 IPR000270 GO:0005515
Vivi5g02796 910 MobiDBLite consensus disorder prediction 770 804 - -
Vivi5g02796 910 ProSiteProfiles RWP-RK domain profile. 568 649 IPR003035 -
Vivi5g02796 910 PANTHER PROTEIN NLP8 100 903 IPR045012 GO:0003700
Vivi5g02796 910 Pfam RWP-RK domain 581 629 IPR003035 -
Vivi5g02796 910 Gene3D - 818 902 - -
Vivi5g02796 910 SUPERFAMILY CAD & PB1 domains 818 906 - -
Vivi5g02796 910 Pfam PB1 domain 823 901 IPR000270 GO:0005515
Vivi5g02796 910 Coils Coil 97 124 - -
Vivi5g02796 910 SMART PB1_new 822 904 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02796 Vivi-Chr5 114686769 114690436 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02796 1 904 NLP Transcription Factor Family AT2G43500 48.075 0.0 775
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vivi5g02796 PB1 8.1e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02796 - - aprc:113864503 1195.65