Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02791 ATGAGGAAAAGGATATTAGTGTCTTTTCCAAAGCTAGGGTTTAGTTTAGTTTATGATTCCCAACTTCTCCACTTTCTTCTCAGCGTGCCGACTGTGATTACTGGGGAGGAAATCGCAGCAAAACAAACAATGCCTAAGCAAATCAATGAGATTAAAGACTTTCTCCTCACTGCTCGGAGGAAGGATGCGCGCTCCGTGAAAATCAAGAGGAGCAAAGATGTGGTCAAATTCAAGGTTCGTTGCTCCAAGTATCTTTACACTCTTTGTGTGTTTGATACCGAGAAAGCTGATAAGTTGAAGCAATCACTTCCTCCAGGTTTGAATGTGCAAGACCTATAA 339 0.4189 MRKRILVSFPKLGFSLVYDSQLLHFLLSVPTVITGEEIAAKQTMPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDTEKADKLKQSLPPGLNVQDL 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02791 112 FunFam 60S ribosomal protein L38 44 112 - -
Vivi5g02791 112 Pfam Ribosomal L38e protein family 45 111 IPR002675 GO:0003735|GO:0005840|GO:0006412
Vivi5g02791 112 PANTHER 60S RIBOSOMAL PROTEIN L38 44 111 IPR002675 GO:0003735|GO:0005840|GO:0006412
Vivi5g02791 112 Gene3D - 44 112 IPR038464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02791 Vivi-Chr5 114556238 114557272 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02791 44 112 Cytoplasmic Ribosomal Protein Gene Family AT3G59540 92.754 1.13e-42 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02791 K02923 - egt:105955349 137.117