Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02783 ATGCCGCTTCCGACGAAACCAACGAGGCCACCACATGAAACCGGCCGAGACACCGATGAATCGACAACCCCTTCCAATAACCTATGGGTTGGAAATCTAACGCCGGACGTTTCCGATTCCGATCTGATGAACCTTTTCGCTCAACACGGCGCCCTCGATAGCGTCACCTCTTATTCCGCTCGCAGTTACGCTTTCGTCTTCTTCAAACGCGTTGAAGATGCAAAAGCCGCTAAAAACGCGCTTCAAGGCTTCCATTTTCGCGGCAATTCATTGAAAATTGAGTTTGCTAGACCGGCAAAGCCATGCAAACAGCTTTGGGTGGGTGGCATTAGCCCAGCTGTTACAAAGGAAGACTTAGAAGCCGACTTCCGGAAGTTTGGTAAAATCGAGGATTACAAGTTCCTCAGAGACAGAAATACTGCATGTGTTGAATTTTTCAATTTGGACGATGCCATTCAGGCAATGAAAATCATGAATGGAAAACGTATTGGTGGGGAAAATATTCGTGTTGACTTCCTCCGTTCACATTCTACAAGAAAAGATCAATTTCTTGATTATGGGCAATTCCAAGGAAAAAGCTCGGGACCTACTGATTTCTATTCTGGACAAAAAAGGCCACTGTTCTCGTGTCAACAGAATTCACAACCTCAAATGGGGAGGAAGGGTGATGGTCAACCTAATAATATTTTGTGGATCGGTTATCCTCCCAATGTTCAGATTGATGAGCAAATGCTCCACAATGCCATGATTCTATTTGGTGAAATTGAGAATATCAAGAGTTTTCCTTCAAGGCATTATTCATTTGTTGAATTTAGAAGTGTTGATGAAGCCCGACGTGCAAAAGAGGGCCTTCAAGGACGCCTTTTCAATGATCCTCGCATAACGATCAATTATTCCAACGGTGACCAGGTACATGGCAAAGATTACCCTGGCTTCTATCCTGGTAGTAATGGGCCAAGACCTGATTTATTCCTAAATGAGCATCCATATGGACCGTTACAAATGGATTTTTTCGGTCATAATCGTCCTATGGTTCCAAATAATTTTCCTGGACATTTGCCAACTGGTGGTATTGTTGGTCCAAACATGCCAATGCGGCCTTTTGGTCCTCAAGGTGGTCCTGGATCTGTTGTTTCTGGCCCGGATTTTAACGAGAGTAGTACTTTACACAAATTTCAGGATAGTAGCTTGACAAATAAGATGGGTCCAAACTGGAAAAGGCCATCTCCTCCTGCACCAGGGTTGCTTTCTTCTCCTGCAACTGGTTCTCGGCTTCCTGCAAGATCAGCCTCTGGTGCATGGGATGTACTTGATGTAAACAACATTTCAAGAGATTCTAAGCGGTCTAGGATAGACGGTACATTACGTAATGATGAGGCTCCATATGCTGACATTCATGGAAGGGGTATTCTTGGTCCAGGAGGCTCGAGGATAACAGGTGGAGTACATGCTTCTGTCCCACCAGGTGATATGGATCATATATGGCGTGGACTTATTGCAAAAGGAGGATCTCCTGTTTGTCATGCTAGATGCATCCCTATTGGGAAAGGAATAGGGACAGAGCTTCCAGAAATTGTTGATTGCTCAGCTAGGACAGGATTGGATGTACTCGCAAAGCACTATGCAGATGCAATTGACTTTGAGATTGTTTTCTTTCTGCCTGATAGCGAAGATGATTTTTCTGCGTACACTGAATTCTTACGCTACCTTGGTGCAAAAAATCGTGCTGGTGTTGCCAAATTTGGCAATACAACTTTATTCTTGGTACCACCTTCTGATTTCCTGACAAAAGTTTTGAAAGTCAATGGACCTGAACGTTTATATGGTGTCGTTCTAAAGTTTGCACCAGTACCAAGTGGTGTGCCTGTGCACCACTCTTCACAAACGCCTACACCACCGTCTAATCAATATATGCAGCAGTTTCCTCCTTCACAGGCTGACTATGATATGAATCCTGCAAAGGATGACCGGGTTTTACCGATGGACTACAACAGAATGTTGCATGAAGATTCTAAGCTTCCTGCTAAGCAAGTATATCCACCTATAGGTGGGCCTTCAGTTCAATCTGCAGCTCCAGATTATGCTCCAAATACTGCTTCTGGGTCTCAAGCTGGAGTCGCATTAACACCAGAGCTTATTGCGACTTTAGCTTCTTTTCTTCCAACAAATGCGCAATCATCTGCTATTGATGGCGCCAAGTCGGCTGTAGGCTCCTCAACGGTAAAGCCTCCATTTCCTCCTGTGGCACCTAATGATGGAAACCAATCTCAATTATGGAAACAGGATCATCAAATTGCAGATCAATCCATTCATCCACCTCAGCAGTTTAGGAATATGTATAACAGTCACAATGCTCATTTTCAGCCTTATCCGCCAGCATCAGCTCCTGGTCACACTTCTCAAGTGTTTTCTGGAAGTTCTCATACTCAAGACAGTGCTCTTAGCCAGCAACTGCAAGGAGTTGTTTCATCTAGACACATGTCAAATTTTGTTACGCCTAGTCAAAGTGGACATGTACCTGCATCCCCCCATTTCAGTCATCAGTATCAGGCTGAGGTTCCCCCCAATTCTCAGGCTTTCCAACAACCTAATAATAACCCCCAGCCTTTCCAGCAACCTAATAATAACTCTCAGCCTTTCCAGCAACCTAGCAGCACAAATCCTCCGCATCAACCTGTCATGCAATATACAGCAGACCAAATAAACTCTAATCCTCCCATTCAGCAACATCCTGCGTTTGGAGTTAGTCAAGGCACCCCAGAATTGGAGGCTGATAAGAACCAGAGATACCAGTCAACGTTACAGTTTGCTGCCAATCTTCTACTCCAAATACAGCAGCAGCAAACACAAGGAGAACATGGGCCAGGAAATCAACAATGA 2880 0.4448 MPLPTKPTRPPHETGRDTDESTTPSNNLWVGNLTPDVSDSDLMNLFAQHGALDSVTSYSARSYAFVFFKRVEDAKAAKNALQGFHFRGNSLKIEFARPAKPCKQLWVGGISPAVTKEDLEADFRKFGKIEDYKFLRDRNTACVEFFNLDDAIQAMKIMNGKRIGGENIRVDFLRSHSTRKDQFLDYGQFQGKSSGPTDFYSGQKRPLFSCQQNSQPQMGRKGDGQPNNILWIGYPPNVQIDEQMLHNAMILFGEIENIKSFPSRHYSFVEFRSVDEARRAKEGLQGRLFNDPRITINYSNGDQVHGKDYPGFYPGSNGPRPDLFLNEHPYGPLQMDFFGHNRPMVPNNFPGHLPTGGIVGPNMPMRPFGPQGGPGSVVSGPDFNESSTLHKFQDSSLTNKMGPNWKRPSPPAPGLLSSPATGSRLPARSASGAWDVLDVNNISRDSKRSRIDGTLRNDEAPYADIHGRGILGPGGSRITGGVHASVPPGDMDHIWRGLIAKGGSPVCHARCIPIGKGIGTELPEIVDCSARTGLDVLAKHYADAIDFEIVFFLPDSEDDFSAYTEFLRYLGAKNRAGVAKFGNTTLFLVPPSDFLTKVLKVNGPERLYGVVLKFAPVPSGVPVHHSSQTPTPPSNQYMQQFPPSQADYDMNPAKDDRVLPMDYNRMLHEDSKLPAKQVYPPIGGPSVQSAAPDYAPNTASGSQAGVALTPELIATLASFLPTNAQSSAIDGAKSAVGSSTVKPPFPPVAPNDGNQSQLWKQDHQIADQSIHPPQQFRNMYNSHNAHFQPYPPASAPGHTSQVFSGSSHTQDSALSQQLQGVVSSRHMSNFVTPSQSGHVPASPHFSHQYQAEVPPNSQAFQQPNNNPQPFQQPNNNSQPFQQPSSTNPPHQPVMQYTADQINSNPPIQQHPAFGVSQGTPELEADKNQRYQSTLQFAANLLLQIQQQQTQGEHGPGNQQ 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02783 959 SMART rrm1_1 229 297 IPR000504 GO:0003723
Vivi5g02783 959 SMART rrm1_1 27 94 IPR000504 GO:0003723
Vivi5g02783 959 SMART rrm1_1 104 171 IPR000504 GO:0003723
Vivi5g02783 959 MobiDBLite consensus disorder prediction 782 821 - -
Vivi5g02783 959 CDD RRM_SF 105 171 - -
Vivi5g02783 959 PANTHER RNA RECOGNITION MOTIF-CONTAINING 22 98 - -
Vivi5g02783 959 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 91 IPR000504 GO:0003723
Vivi5g02783 959 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 240 294 IPR000504 GO:0003723
Vivi5g02783 959 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 169 IPR000504 GO:0003723
Vivi5g02783 959 CDD RRM_SF 235 297 - -
Vivi5g02783 959 MobiDBLite consensus disorder prediction 856 930 - -
Vivi5g02783 959 MobiDBLite consensus disorder prediction 1 29 - -
Vivi5g02783 959 FunFam Flowering time control protein FPA isoform A 101 220 - -
Vivi5g02783 959 FunFam Flowering time control protein FPA 18 100 - -
Vivi5g02783 959 SUPERFAMILY RNA-binding domain, RBD 13 100 IPR035979 GO:0003676
Vivi5g02783 959 Pfam SPOC domain 491 607 IPR012921 -
Vivi5g02783 959 CDD RRM_SF 28 94 - -
Vivi5g02783 959 Gene3D - 101 182 IPR012677 -
Vivi5g02783 959 Gene3D - 8 100 IPR012677 -
Vivi5g02783 959 MobiDBLite consensus disorder prediction 394 428 - -
Vivi5g02783 959 SUPERFAMILY RNA-binding domain, RBD 100 197 IPR035979 GO:0003676
Vivi5g02783 959 SUPERFAMILY RNA-binding domain, RBD 216 305 IPR035979 GO:0003676
Vivi5g02783 959 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 175 IPR000504 GO:0003723
Vivi5g02783 959 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Vivi5g02783 959 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 98 IPR000504 GO:0003723
Vivi5g02783 959 Gene3D - 214 308 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02783 Vivi-Chr5 114434660 114444076 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02783 1 355 Eukaryotic Initiation Factors Gene Family AT4G34110 21.588 3.24e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02783 - - mtr:11412967 1494.95