Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02782 ATGCCGCTTCCGACGAAACCAACGAGGCCACCACATGAAACCGGCCGAGACACCGATGAATCGACAACCCCTTCCAATAACCTATGGGTTGGAAATCTAACGCCGGACGTTTCCGATTCCGATCTGATGAACCTTTTCGCTCAACACGGCGCCCTCGATAGCGTCACCTCTTATTCCGCTCGCAGTTACGCTTTCGTCTTCTTCAAACGCGTTGAAGATGCAAAAGCCGCTAAAAACGCGCTTCAAGGCTTCCATTTTCGCGGCAATTCATTGAAAATTGAGTTTGCTAGACCGGCAAAGCCATGCAAACAGCTTTGGGTGGGTGGCATTAGCCCAGCTGTTACAAAGGAAGACTTAGAAGCCGACTTCCGGAAGTTTGGTAAAATCGAGGATTACAAGTTCCTCAGAGACAGAAATACTGCATGTGTTGAATTTTTCAATTTGGACGATGCCATTCAGGCAATGAAAATCATGAATGGAAAACGTATTGGTGGGGAAAATATTCGTGTTGACTTCCTCCGTTCACATTCTACAAGAAAAGATCAATTTCTTGATTATGGGCAATTCCAAGGAAAAAGCTCGGGACCTACTGATTTCTATTCTGGACAAAAAAGGCCACTGAATTCACAACCTCAAATGGGGAGGAAGGGTGATGGTCAACCTAATAATATTTTGTGGATCGGTTATCCTCCCAATGTTCAGATTGATGAGCAAATGCTCCACAATGCCATGATTCTATTTGGTGAAATTGAGAATATCAAGAGTTTTCCTTCAAGGCATTATTCATTTGTTGAATTTAGAAGTGTTGATGAAGCCCGACGTGCAAAAGAGGGCCTTCAAGGACGCCTTTTCAATGATCCTCGCATAACGATCAATTATTCCAACGGTGACCAGGTACATGGCAAAGATTACCCTGGCTTCTATCCTGGTAGTAATGGGCCAAGACCTGATTTATTCCTAAATGAGCATCCATATGGACCGTTACAAATGGATTTTTTCGGTCATAATCGTCCTATGGTTCCAAATAATTTTCCTGGACATTTGCCAACTGGTGGTATTGTTGGTCCAAACATGCCAATGCGGCCTTTTGGTCCTCAAGGTGGTCCTGGATCTGTTGTTTCTGGCCCGGATTTTAACGAGAGTAGTACTTTACACAAATTTCAGGATAGTAGCTTGACAAATAAGATGGGTCCAAACTGGAAAAGGCCATCTCCTCCTGCACCAGGGTTGCTTTCTTCTCCTGCAACTGGTTCTCGGCTTCCTGCAAGATCAGCCTCTGGTGCATGGGATGTACTTGATGTAAACAACATTTCAAGAGATTCTAAGCGGTCTAGGATAGACGGTACATTACGTAATGATGAGGCTCCATATGCTGACATTCATGGAAGGGGTATTCTTGGTCCAGGAGGCTCGAGGATAACAGGTGGAGTACATGCTTCTGTCCCACCAGGTGATATGGATCATATATGGCGTGGACTTATTGCAAAAGGAGGATCTCCTGTTTGTCATGCTAGATGCATCCCTATTGGGAAAGGAATAGGGACAGAGCTTCCAGAAATTGTTGATTGCTCAGCTAGGACAGGATTGGATGTACTCGCAAAGCACTATGCAGATGCAATTGACTTTGAGATTGTTTTCTTTCTGCCTGATAGCGAAGATGATTTTTCTGCGTACACTGAATTCTTACGCTACCTTGGTGCAAAAAATCGTGCTGGTGTTGCCAAATTTGGCAATACAACTTTATTCTTGGTACCACCTTCTGATTTCCTGACAAAAGTTTTGAAAGTCAATGGACCTGAACGTTTATATGGTGTCGTTCTAAAGTTTGCACCAGTACCAAGTGGTGTGCCTGTGCACCACTCTTCACAAACGCCTACACCACCGTCTAATCAATATATGCAGCAGTTTCCTCCTTCACAGGCTGACTATGATATGAATCCTGCAAAGGATGACCGGGTTTTACCGATGGACTACAACAGAATGTTGCATGAAGATTCTAAGCTTCCTGCTAAGCAAGTATATCCACCTATAGGTGGGCCTTCAGTTCAATCTGCAGCTCCAGATTATGCTCCAAATACTGCTTCTGGGTCTCAAGCTGGAGTCGCATTAACACCAGAGCTTATTGCGACTTTAGCTTCTTTTCTTCCAACAAATGCGCAATCATCTGCTATTGATGGCGCCAAGTCGGCTGTAGGCTCCTCAACGGTAAAGCCTCCATTTCCTCCTGTGGCACCTAATGATGGAAACCAATCTCAATTATGGAAACAGGATCATCAAATTGCAGATCAATCCATTCATCCACCTCAGCAGTTTAGGAATATGTATAACAGTCACAATGCTCATTTTCAGCCTTATCCGCCAGCATCAGCTCCTGGTCACACTTCTCAAGTGTTTTCTGGAAGTTCTCATACTCAAGACAGTGCTCTTAGCCAGCAACTGCAAGGAGTTGTTTCATCTAGACACATGTCAAATTTTGTTACGCCTAGTCAAAGTGGACATGTACCTGCATCCCCCCATTTCAGTCATCAGTATCAGGCTGAGGTTCCCCCCAATTCTCAGGCTTTCCAACAACCTAATAATAACCCCCAGCCTTTCCAGCAACCTAATAATAACTCTCAGCCTTTCCAGCAACCTAGCAGCACAAATCCTCCGCATCAACCTGTCATGCAATATACAGCAGACCAAATAAACTCTAATCCTCCCATTCAGCAACATCCTGCGTTTGGAGTTAGTCAAGGCACCCCAGAATTGGAGGCTGATAAGAACCAGAGATACCAGTCAACGTTACAGTTTGCTGCCAATCTTCTACTCCAAATACAGCAGCAGCAAACACAAGGAGAACATGGGCCAGGAAATCAACAATGA 2865 0.4447 MPLPTKPTRPPHETGRDTDESTTPSNNLWVGNLTPDVSDSDLMNLFAQHGALDSVTSYSARSYAFVFFKRVEDAKAAKNALQGFHFRGNSLKIEFARPAKPCKQLWVGGISPAVTKEDLEADFRKFGKIEDYKFLRDRNTACVEFFNLDDAIQAMKIMNGKRIGGENIRVDFLRSHSTRKDQFLDYGQFQGKSSGPTDFYSGQKRPLNSQPQMGRKGDGQPNNILWIGYPPNVQIDEQMLHNAMILFGEIENIKSFPSRHYSFVEFRSVDEARRAKEGLQGRLFNDPRITINYSNGDQVHGKDYPGFYPGSNGPRPDLFLNEHPYGPLQMDFFGHNRPMVPNNFPGHLPTGGIVGPNMPMRPFGPQGGPGSVVSGPDFNESSTLHKFQDSSLTNKMGPNWKRPSPPAPGLLSSPATGSRLPARSASGAWDVLDVNNISRDSKRSRIDGTLRNDEAPYADIHGRGILGPGGSRITGGVHASVPPGDMDHIWRGLIAKGGSPVCHARCIPIGKGIGTELPEIVDCSARTGLDVLAKHYADAIDFEIVFFLPDSEDDFSAYTEFLRYLGAKNRAGVAKFGNTTLFLVPPSDFLTKVLKVNGPERLYGVVLKFAPVPSGVPVHHSSQTPTPPSNQYMQQFPPSQADYDMNPAKDDRVLPMDYNRMLHEDSKLPAKQVYPPIGGPSVQSAAPDYAPNTASGSQAGVALTPELIATLASFLPTNAQSSAIDGAKSAVGSSTVKPPFPPVAPNDGNQSQLWKQDHQIADQSIHPPQQFRNMYNSHNAHFQPYPPASAPGHTSQVFSGSSHTQDSALSQQLQGVVSSRHMSNFVTPSQSGHVPASPHFSHQYQAEVPPNSQAFQQPNNNPQPFQQPNNNSQPFQQPSSTNPPHQPVMQYTADQINSNPPIQQHPAFGVSQGTPELEADKNQRYQSTLQFAANLLLQIQQQQTQGEHGPGNQQ 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02782 954 CDD RRM_SF 105 171 - -
Vivi5g02782 954 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 91 IPR000504 GO:0003723
Vivi5g02782 954 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 235 289 IPR000504 GO:0003723
Vivi5g02782 954 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 169 IPR000504 GO:0003723
Vivi5g02782 954 SUPERFAMILY RNA-binding domain, RBD 211 300 IPR035979 GO:0003676
Vivi5g02782 954 Gene3D - 209 303 IPR012677 -
Vivi5g02782 954 MobiDBLite consensus disorder prediction 1 29 - -
Vivi5g02782 954 PANTHER RNA RECOGNITION MOTIF-CONTAINING 24 939 - -
Vivi5g02782 954 MobiDBLite consensus disorder prediction 389 423 - -
Vivi5g02782 954 MobiDBLite consensus disorder prediction 187 217 - -
Vivi5g02782 954 SMART rrm1_1 27 94 IPR000504 GO:0003723
Vivi5g02782 954 SMART rrm1_1 104 171 IPR000504 GO:0003723
Vivi5g02782 954 SMART rrm1_1 224 292 IPR000504 GO:0003723
Vivi5g02782 954 FunFam Flowering time control protein FPA isoform A 101 215 - -
Vivi5g02782 954 SUPERFAMILY RNA-binding domain, RBD 13 100 IPR035979 GO:0003676
Vivi5g02782 954 MobiDBLite consensus disorder prediction 851 925 - -
Vivi5g02782 954 CDD RRM_SF 28 94 - -
Vivi5g02782 954 Pfam SPOC domain 486 602 IPR012921 -
Vivi5g02782 954 Gene3D - 101 182 IPR012677 -
Vivi5g02782 954 Gene3D - 8 100 IPR012677 -
Vivi5g02782 954 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 175 IPR000504 GO:0003723
Vivi5g02782 954 MobiDBLite consensus disorder prediction 777 816 - -
Vivi5g02782 954 SUPERFAMILY RNA-binding domain, RBD 100 197 IPR035979 GO:0003676
Vivi5g02782 954 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 223 296 IPR000504 GO:0003723
Vivi5g02782 954 CDD RRM_SF 230 292 - -
Vivi5g02782 954 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 98 IPR000504 GO:0003723
Vivi5g02782 954 FunFam Flowering time control protein FPA 18 100 - -
Vivi5g02782 954 MobiDBLite consensus disorder prediction 187 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02782 Vivi-Chr5 114434660 114444076 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02782 1 350 Eukaryotic Initiation Factors Gene Family AT4G34110 21.608 1.26e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02782 - - mtr:11412967 1501.11