Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02747 ATGTATCCCAAACGTTCTAGTCAGGATGATCCTGTTTCCGGGCCAGTACGCACAAGTGATAGGATTAAAACAAGGCCACCAGGCTATAACCGTGCACCATTCTTGTATTACAACTCAAATCTTAGGCGTCCTAGGAAAAGCAAGAATAAAACGAGAACAGCAGCTTCACAGATTGCTAAGATGCTGCGTCCAGGGAATCGGAAAGCACACGACTCAAATGCTAATTCTGGCTCTGCCAACCTTCGGCGCTCAACCAGGGAAAGAAGAGTTAATGTAAATCTTATTGAGTTTGCAGACAGCTCTGGATCTGAGGATGCAGACTTAATGAGACCTACATTTCGACCATTAAGAAACCGGATTGGCAACAGCGTCAGCCGAGATGATGTAGCATCTTCTAAGCGCAAACGTGCATCGGATACTAAACAAGCACCTCGACGGGAAGGTCTAAGGCCTCGTCGATCGAAGGCTGCTGGTAGAGAAAGATTAATTTCAGAATCAGATGATGGTCAAGACCTTTCAGAGGAGAAAGTTGAACAAGATGAAACAGAAAATGGAGATGATGTTGAGGAAAATGATGCAGAAGATGGTCATGAGAGGGAGGGGGATGCTGAGGGTGAAGATGAAGGTGAGGATGAAGGTGAGGATGAAGGTGATGAGGATGGTGATGATGAAGACGGTGAAGAAGAGCAGGATGGAAGAAGGCGCTATGATCTTCGAAATCGTGCAGATGTCCGCAGGTTCTCTATGGAGGAAGGGAAGACGCGGCCAAGGTCACCTCGAAGAGTGTTACATCAAGGTATGGGAACTAAGGTCAGCAGGGATGTAAGGAAGGGTGGATCACGTGTTCACAAGCGCCACCGTTCAACAAGGCCTGAAGATTCGGATGACTCCCTTCTTGTGGATGAGTTGGACCAAGGCCCTGCTATTCCATGGGGTCGAGGTGGCGGCAGATCTGGCCCACCTTTTCTTTTTGGGGGCCTAGACACACATGGAACAGCAGCTTGGGGATTAAACCTTGCTGCATCGGGCTGGGGTCATCAGGGCGATGCTTTTGCTACTCTAACTTCAGGGGTTCAAACTGCTGGTCCAAGCTCTAAGGGAGGGGCTGATATCCAGCCCTTGCAGGTTGATGATAGTGTGAGTTTTGATGATATAGGCGGGCTCTCTGAATACATTGATGCTCTGAAGGAAATGGTTTTCTTTCCATTGTTGTATCCAGATTTTTTTGCAAGTTACCATATAACTCCACCTAGGGGGGTGTTGTTATGTGGCCCCCCTGGCACGGGAAAAACATTGATCGCTAGAGCTTTGGCTTGCTCTGCTTCAAAAGCTGGTCAGAAGGTTAGCTTTTACATGCGCAAAGGAGCAGACGTGCTAAGCAAGTGGGTAGGTGAGGCTGAAAGACAACTGAAACTTCTTTTTGAGGAGGCACAGAGGAATCAACCTTCTATTATCTTCTTTGATGAAATTGATGGACTTGCACCCGTGAGATCTAGCAAGCAAGAACAAATTCACAATTCCATTGTGTCCACTTTGCTTGCTTTGATGGATGGCCTTGATTCTCGTGGACAAGTTGTTTTAATTGGTGCTACCAACAGGATTGATGCTATTGACGGAGCCTTGCGACGTCCTGGCAGATTTGATCGAGAATTTAACTTTCCCTTACCTGGTTGTGAGGCACGTGCTGAAATATTAAATATTCATACTCGTAAGTGGAAACATCCTCCTCCAGAGGAACTGAAAAAGGAACTTGCAGCTAGTTGTGTAGGTTACTGTGGTGCTGACCTAAAGGCTCTCTGTACTGAAGCTGCCATTCGTGCTTTCCGTGTAAAATATCCACAGGTTTATACAAGCGATGACAAATTTCTCATTGATGTTGATTCTATTAAAGTAGAAAAGTGTCATTTTATTGAAGCAATGTCTACGATTACTCCTGCCGCTCATAGAGGAGCTACTGTGCACTCTAGGCCATTGTCACTAGTAGTTCAACCATGTCTTCAGAGATACCTGGAGAAAGCCATGAGTACAATATCTGATATTTTCCCTCCAGTATCTGTTGCATCTGAGTTAACCAAACTTTCCATGCTTTCGTACGGGTCTGCAATTCCACTTGTATATCGACCTAGGCTTCTACTTTGTGGTGGTGAAGGCACAGGGCTGGATCATCTTGGGCCTGCGGTTTTACATGAACTGGAAAAATTTCCTGTGCATTCATTAGGACTTCCATCTCTTCTGTCAGATCCCAGTGCAAAGACGCCGGAGGAGGCGTTGGTACATATATTTGGTGAAGCTAGAAGAACAACACCATCAATTCTCTATTTACCACAGTTTGATGTTTGGTGGGAAACTGCTCATGAACAGCTCAGAGCCGTTCTCCTGACTATGCTAGAAGAATTGCCATCTGACTTACCTATCTTACTTCTTGGTACATCTTCAGCTGCACTTGCTGATGTTGAGGAAGTGCCTACATCAGTTTTCCCTCATCGCTCCGTTTATCAAGTGAACATGCCATCTACCGAAGACAGGACCTTGTTTTTTACTCGTTTAATAGAAGCTGCTATGTCGATATTATTGGAGAGAATCAGCAACAAATCCCAGGATACAGGACGCCGTTCTGAACTTCCCAGGGCACCAAAATTGGCGAGTGGCCCAAAGGCATCTGAGCTAAAAGCAAAGGTTGAAGCTGAGCAGCATGCACTTAGAAGATTGCGAATGTGCCTTAGAGATGTCTGCAACCGGATATTGTATGACAAACGGTTTAATGCCTTCCATTTTCCCGTCTCAGATGAAGATGCGCCTAATTATCGCTCAATTATACAAAACCCAATGGACATTGCTACCATCTTGCAGCATGTTGATAACGGCAACTATATTGCATGTGCAGCATTTCTGCAGGACATTGATCTTATTGTTTCCAATGCAAAGGCTTACAATGGAGATGACTACAATGGCACTAGGATTGTCAGTAGAGCTTGTGAGCTCCGTGATACGGTGCATGGGATGCTCTCTCAAATGGATCCAGCACTGGTTGCATTTTGTGACAAGATTGCTAGCCAAGGTGGCCCAGTTCAGTTGCCTGAGGAATTAGGGGATTCTACGTTCCCCGCTACTCCTGTTGTGCAGCTGAGTACCACTACTAGAACGAGTGCTCGACTTCGTCATGTCCAACCAGAGGTTAACATGGATCAGGGTTACGAAGTATTGAAGCGGACTAAAAAGATCGGTGATACTGTACATGCAGAAAGCAAATCCCAAGATTCAATACCAGTAAAGTCCTCCCAGGAGCAGCATCAGGCACATGACGAGGATTCTGAAAGAATGGAACCTGAAGCAATTGATGGAGATTTGCCTGGATCTTGTACAAATAACCTTGCTGATGGCAGCAGCCTTCATGATATTACAATGCAAGATAGTGAATTTTCAAGACAGGTTGAGTCTGTTAAACAGCATTTCGTTAAGCGCAGTGAAAAATACAGCATCCCACAACTTGAAAGGCTGTACACAAGAATCATGAAGGGTGTCTTTGAAACCAAAGATAAAGGAATGAATGATGATGACCTCAAGAATTCGGTTTTGGGGTTTTTGTTGAAATTTGTAGAGGATGATGCGAATTTCTGA 3618 0.4522 MYPKRSSQDDPVSGPVRTSDRIKTRPPGYNRAPFLYYNSNLRRPRKSKNKTRTAASQIAKMLRPGNRKAHDSNANSGSANLRRSTRERRVNVNLIEFADSSGSEDADLMRPTFRPLRNRIGNSVSRDDVASSKRKRASDTKQAPRREGLRPRRSKAAGRERLISESDDGQDLSEEKVEQDETENGDDVEENDAEDGHEREGDAEGEDEGEDEGEDEGDEDGDDEDGEEEQDGRRRYDLRNRADVRRFSMEEGKTRPRSPRRVLHQGMGTKVSRDVRKGGSRVHKRHRSTRPEDSDDSLLVDELDQGPAIPWGRGGGRSGPPFLFGGLDTHGTAAWGLNLAASGWGHQGDAFATLTSGVQTAGPSSKGGADIQPLQVDDSVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACSASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCEARAEILNIHTRKWKHPPPEELKKELAASCVGYCGADLKALCTEAAIRAFRVKYPQVYTSDDKFLIDVDSIKVEKCHFIEAMSTITPAAHRGATVHSRPLSLVVQPCLQRYLEKAMSTISDIFPPVSVASELTKLSMLSYGSAIPLVYRPRLLLCGGEGTGLDHLGPAVLHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFGEARRTTPSILYLPQFDVWWETAHEQLRAVLLTMLEELPSDLPILLLGTSSAALADVEEVPTSVFPHRSVYQVNMPSTEDRTLFFTRLIEAAMSILLERISNKSQDTGRRSELPRAPKLASGPKASELKAKVEAEQHALRRLRMCLRDVCNRILYDKRFNAFHFPVSDEDAPNYRSIIQNPMDIATILQHVDNGNYIACAAFLQDIDLIVSNAKAYNGDDYNGTRIVSRACELRDTVHGMLSQMDPALVAFCDKIASQGGPVQLPEELGDSTFPATPVVQLSTTTRTSARLRHVQPEVNMDQGYEVLKRTKKIGDTVHAESKSQDSIPVKSSQEQHQAHDEDSERMEPEAIDGDLPGSCTNNLADGSSLHDITMQDSEFSRQVESVKQHFVKRSEKYSIPQLERLYTRIMKGVFETKDKGMNDDDLKNSVLGFLLKFVEDDANF 1205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02747 1205 CDD Bromo_AAA 900 1010 - -
Vivi5g02747 1205 PRINTS Bromodomain signature 948 966 IPR001487 GO:0005515
Vivi5g02747 1205 PRINTS Bromodomain signature 966 985 IPR001487 GO:0005515
Vivi5g02747 1205 PRINTS Bromodomain signature 932 948 IPR001487 GO:0005515
Vivi5g02747 1205 Gene3D - 678 848 IPR027417 -
Vivi5g02747 1205 SMART bromo_6 900 1007 IPR001487 GO:0005515
Vivi5g02747 1205 ProSiteProfiles Bromodomain profile. 923 985 IPR001487 GO:0005515
Vivi5g02747 1205 Gene3D - 378 648 IPR027417 -
Vivi5g02747 1205 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 704 919 IPR027417 -
Vivi5g02747 1205 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 379 644 IPR027417 -
Vivi5g02747 1205 PANTHER AAA DOMAIN-CONTAINING 1073 1191 IPR045199 -
Vivi5g02747 1205 ProSitePatterns AAA-protein family signature. 525 543 IPR003960 GO:0005524|GO:0016887
Vivi5g02747 1205 SMART AAA_5 416 557 IPR003593 GO:0016887
Vivi5g02747 1205 SMART AAA_5 706 868 IPR003593 GO:0016887
Vivi5g02747 1205 SUPERFAMILY Bromodomain 896 1010 IPR036427 GO:0005515
Vivi5g02747 1205 Gene3D - 556 641 - -
Vivi5g02747 1205 MobiDBLite consensus disorder prediction 867 888 - -
Vivi5g02747 1205 MobiDBLite consensus disorder prediction 228 258 - -
Vivi5g02747 1205 Pfam AAA+ lid domain 582 617 IPR041569 -
Vivi5g02747 1205 MobiDBLite consensus disorder prediction 128 170 - -
Vivi5g02747 1205 MobiDBLite consensus disorder prediction 171 227 - -
Vivi5g02747 1205 Pfam Bromodomain 914 981 IPR001487 GO:0005515
Vivi5g02747 1205 FunFam ATPase family, AAA domain-containing 2 378 561 - -
Vivi5g02747 1205 Pfam ATPase family associated with various cellular activities (AAA) 420 555 IPR003959 GO:0005524|GO:0016887
Vivi5g02747 1205 MobiDBLite consensus disorder prediction 1 85 - -
Vivi5g02747 1205 MobiDBLite consensus disorder prediction 102 300 - -
Vivi5g02747 1205 FunFam ATPase family AAA domain-containing protein 892 1020 - -
Vivi5g02747 1205 MobiDBLite consensus disorder prediction 1095 1112 - -
Vivi5g02747 1205 FunFam ATPase family AAA domain-containing protein 2B 556 641 - -
Vivi5g02747 1205 Gene3D - 892 1020 IPR036427 GO:0005515
Vivi5g02747 1205 MobiDBLite consensus disorder prediction 1076 1113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02747 Vivi-Chr5 113670427 113679441 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02747 366 620 Calmodulin-binding Proteins AT3G56690 36.293 1.06e-40 161