Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02703 ATGGGGAGTTGCGTATCCACACAAGGCGGCAAAGGCGTACGAAAGAGATCAAAAGATCATCATAACAATAATAACAACAATAACAAACAAAACAAAACTGCTTATGATCAAGACCAGGACGCTACAACGCCGACCGGGCGTAGGTCTAGCGTGACATCGCGTCCACTAAACGTTGTAACGAATCCAAGTCCGGGTAGCATATTTGATAAATATGAGTTAGGAAAAGAGCTCGGAAGAGGAGAGTTTGGTGTGACCGTGCGTTGCGTGGACCTGCAAACGGGGGAGGCGTTTGCGTGTAAGAAGATAGCGAAGACGAAGCTGAGGACAGAGATTGATATTCAGGATGTGAGGAGGGAGGTTCAGATTATGAAGCATTTGCCTAATCATCCGAATATTGTGGCTTTTAGAGAAGCTTATGAGGATAAAGATGCTGTTTATTTAGTTATGGAATTGTGTGAAGGCGGTGAACTTTTCGATAGGATTGTTGCGAAAGGTCATTATACAGAAAGAGCTGCGGCTAATGTTGCCAAAACCATTCTTGAAGTTTGCAAGGTGTGTCATGAACATGGTGTTATACATAGGGACTTAAAGCCTGAAAATTTCTTGTTTTCAGATGCAAGTGAGACAGCTTCACTTAAGGCAATTGATTTTGGTCTTTCCACTTTTTATGTAACCGGCGATAGATTCAATGAAATTGTTGGAAGTCCTTATTACATGGCTCCGGAAGTTTTGAGACGAAACTATGGACAAGAGATCGATATTTGGAGCACGGGCGTTATTCTTTATATTTTGCTTTGCGGTGTTCCACCCTTTTGGGCAGAAACTGAAGAGGCCATAGCGCAGGCGATTATCCGGGGTAATGTAGATTTCACAAGAGATCCTTGGCCTAAAGTTTCAGAAGAAGCAAAATACCTTGTTAAGCGTATGCTTGATCCAAATCCGTACACTAGAATCACAGTTCAAGAAGTTCTTGATCATACCTGGATACAACATAGAGAGCATGGTAGAACTATTTCTCTAGGAGACCATGTGAGAATGAGGATCAAGCAATTCTCATTGATGAATAGATTCAAGAAGAAAGTCCTTAGAGTGGTGGCTGATAACTTGCCAGATGAACAAATTGATGGACTTAGAAAACTGTTTGATATGATGGATAAGGACTGTGATGGAGTCTTAACATTTGAAGAGCTGAAAGATGGCTTTTCAATGATTGGACAAGTTATTCCTGATCCTGATATTCAGACATTAATAGATGCAGCAGATTCTGAGGGAAATGGCAACTTGAATTGCGAAGAGTTCATCACAATGAGTGTTCATTTGAGAAGGATTGGAAACGATGAGCATCTCACCGAAGCATTCAATTTCTTTGACAAGAATAAGAGCGGATATGTTGAGTTTGACGAGTTAAAAGACGCCTTATCAGATGATGATTCCATAGACGACCAAGTGGTCAGAGACATTCTAAACGACGTTGATTTGGATAAGGATGGTCGAATAAGTTTTGAGGAGTTTAAGGCAATGATGACGACAGGAGGAGATTGGAAAATGGCATCTCGACAGTATTCAAGAGCAATGTTAAATGCATTAAGCTTCAGAATGTTTAAGGATAAATCTGCTGGAGTAGTAACTAACTAA 1635 0.408 MGSCVSTQGGKGVRKRSKDHHNNNNNNNKQNKTAYDQDQDATTPTGRRSSVTSRPLNVVTNPSPGSIFDKYELGKELGRGEFGVTVRCVDLQTGEAFACKKIAKTKLRTEIDIQDVRREVQIMKHLPNHPNIVAFREAYEDKDAVYLVMELCEGGELFDRIVAKGHYTERAAANVAKTILEVCKVCHEHGVIHRDLKPENFLFSDASETASLKAIDFGLSTFYVTGDRFNEIVGSPYYMAPEVLRRNYGQEIDIWSTGVILYILLCGVPPFWAETEEAIAQAIIRGNVDFTRDPWPKVSEEAKYLVKRMLDPNPYTRITVQEVLDHTWIQHREHGRTISLGDHVRMRIKQFSLMNRFKKKVLRVVADNLPDEQIDGLRKLFDMMDKDCDGVLTFEELKDGFSMIGQVIPDPDIQTLIDAADSEGNGNLNCEEFITMSVHLRRIGNDEHLTEAFNFFDKNKSGYVEFDELKDALSDDDSIDDQVVRDILNDVDLDKDGRISFEEFKAMMTTGGDWKMASRQYSRAMLNALSFRMFKDKSAGVVTN 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02703 544 FunFam calcium-dependent protein kinase 13 157 337 - -
Vivi5g02703 544 Pfam Protein kinase domain 71 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g02703 544 MobiDBLite consensus disorder prediction 26 61 - -
Vivi5g02703 544 SUPERFAMILY Protein kinase-like (PK-like) 67 330 IPR011009 -
Vivi5g02703 544 ProSiteProfiles EF-hand calcium-binding domain profile. 444 478 IPR002048 GO:0005509
Vivi5g02703 544 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Vivi5g02703 544 MobiDBLite consensus disorder prediction 1 61 - -
Vivi5g02703 544 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Vivi5g02703 544 SMART serkin_6 71 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g02703 544 SUPERFAMILY EF-hand 368 508 IPR011992 -
Vivi5g02703 544 Pfam EF-hand domain pair 389 439 IPR002048 GO:0005509
Vivi5g02703 544 Gene3D - 338 510 - -
Vivi5g02703 544 ProSiteProfiles Protein kinase domain profile. 71 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g02703 544 PANTHER SERINE/THREONINE-PROTEIN KINASE 66 501 - -
Vivi5g02703 544 CDD EFh 448 509 IPR002048 GO:0005509
Vivi5g02703 544 ProSitePatterns EF-hand calcium-binding domain. 385 397 IPR018247 -
Vivi5g02703 544 FunFam Calcium-dependent protein kinase 7 338 512 - -
Vivi5g02703 544 FunFam Calcium-dependent protein kinase 1 73 156 - -
Vivi5g02703 544 ProSiteProfiles EF-hand calcium-binding domain profile. 479 514 IPR002048 GO:0005509
Vivi5g02703 544 Gene3D Phosphorylase Kinase; domain 1 73 156 - -
Vivi5g02703 544 SMART efh_1 448 476 IPR002048 GO:0005509
Vivi5g02703 544 SMART efh_1 483 511 IPR002048 GO:0005509
Vivi5g02703 544 SMART efh_1 412 440 IPR002048 GO:0005509
Vivi5g02703 544 SMART efh_1 376 404 IPR002048 GO:0005509
Vivi5g02703 544 Pfam EF-hand domain pair 447 508 IPR002048 GO:0005509
Vivi5g02703 544 ProSiteProfiles EF-hand calcium-binding domain profile. 372 407 IPR002048 GO:0005509
Vivi5g02703 544 Gene3D Transferase(Phosphotransferase) domain 1 157 337 - -
Vivi5g02703 544 ProSitePatterns EF-hand calcium-binding domain. 492 504 IPR018247 -
Vivi5g02703 544 CDD STKc_CAMK 70 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02703 Vivi-Chr5 113368668 113371709 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02703 1 536 EF-hand Containing Proteins AT2G31500 65.568 0.0 741
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vivi5g02703 Pkinase 5.1e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02703 K13412 - gmx:100818929 846.654