Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02702 ATGGACTCCGAGGATGATATGCACGATGCCAACGACATGGAGTCCCTCGACGATGATGATTTTTACAGCGGTGACACCGATGATGCTGCCTTGGACTATTACAGCGACTACGATGATGACGCCGGTGATTACTTCGACGATGCCGATAAGATTGAGTCTCGTCGCCCTGAGCAAAATTTTACAATCTTGAAGGATTCTGATATCCATGTAAGACAGGAAGATGACATTAGTAGAGTTGCAGCTGTTCTTTCTGTGTCAAGAGTTTTTGCTAGCATACTACTGCGTCACTACAATTGGAGCGTTAGTAAAGTGCATGATGCATGGTTTGCTGATGAAGAGCGAGTTCGAAAAGCGGTTGGGTTGTTGGAAAAGCCAGCTGTGCAGAATCGTAATGCTAGAGAGCTTACATGTGGCATCTGTTTTGAAAACTATCCTTGTTCTGGTATTGGAATGGCTTGTTGTGGTCATCCATACTGCTACTCTTGCTGGGAAGGATATATCAGCACGTCCATTAATGATGGCCCTGGATGTTTGATGTTGAGATGTCCCGAACCCACCTGTGGGGCTGCTATTGGTCAAGATATGATTGATTTATTAGCATGTGATGAAGATAAACAAAAGTACAACCGTTACCTTCTTAGATCTTATATTGAAGACAATAAAAAGTCAAAGTGGTGTCCTGCTCCTGGCTGTGAATATGCAGTTACTTATGATGCTGGAGGTGGAAATTATGATGTCTCTTGCCTCTGTTCGTATAGCTTTTGCTGGAATTGCACCGAGGAGGCTCATCGTCCAGTAGACTGTGGCACGGTGGTAAAGTGGATTTTGAAAAACAGTGCAGAGTCTGAAAACATGAACTGGATACTTGCTAACTCAAAGCCATGTCCAAAGTGCAAGCGGCCAATTGAAAAAAATCAAGGGTGCATGCACATCACGTGCACTCCACCCTGTAAATTCGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGATCATGGTGAAAGAACCGGCGGATTTTATGCTTGCAATCGTTATGAAGCAGCAAAGCAAGAAGGAGTGTATGATGATACTGAAAGAAGAAGAGAAATGGCGAAGAATTCATTGGAGAGATACACACATTATTATGAGCGATGGGCCAGCAACCAATCTTCAAGGCAGAAAGCTCTTGCCGATCTGCATCAGATGCAAACTGTTCATATTGAGAAGCTTAGTGATACACAGTGCCAACCTGAGTCACAACTTAAGTTCATTACTGAGGCTTGGTTGCAGATAGTTGAGTGTAGGAGAGTGCTGAAATGGACATATGCTTATGGATACTATTTACCTGAGCACGAGCGTGCGAAAAAACCGTTCTTTGAGTACTTGCAAGGTGAAGCAGAATCTGGTCTAGAGAGACTTCATCAATGTGCTGAAAAAGAACTACAGCAGTTCCTCAGTGCCGAAGGCCCATCTAAAGAATTCAATGACTTCCGTACAAAGTTAGCTGGATTGACTAGTGTGACTAAAAACTACTTCGAGAACTTAGTGAGGGCATTAGAGAATGGTTTAGCTGATGTGGACGGTAATGGAGCTACCTTCAGCAAAGCAACGAGCTCAAAAAATGCAGCTGGGAGCAGCAAGGGGAGAGGTGGCAGAGGAAAGGCAGCTTTGCGAACCAGCAGAACGACTGATGATAGTCACTGGAGCTGCGACCATTGTACCTCTATGAATATCAAATCTGCCACCACATGCCAGATTTGCAATCAGCGTCGATGA 1755 0.4433 MDSEDDMHDANDMESLDDDDFYSGDTDDAALDYYSDYDDDAGDYFDDADKIESRRPEQNFTILKDSDIHVRQEDDISRVAAVLSVSRVFASILLRHYNWSVSKVHDAWFADEERVRKAVGLLEKPAVQNRNARELTCGICFENYPCSGIGMACCGHPYCYSCWEGYISTSINDGPGCLMLRCPEPTCGAAIGQDMIDLLACDEDKQKYNRYLLRSYIEDNKKSKWCPAPGCEYAVTYDAGGGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVVKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDDTERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHERAKKPFFEYLQGEAESGLERLHQCAEKELQQFLSAEGPSKEFNDFRTKLAGLTSVTKNYFENLVRALENGLADVDGNGATFSKATSSKNAAGSSKGRGGRGKAALRTSRTTDDSHWSCDHCTSMNIKSATTCQICNQRR 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02702 584 CDD Rcat_RBR_ARI7-like 291 345 - -
Vivi5g02702 584 ProSiteProfiles Zinc finger RanBP2 type profile. 557 584 IPR001876 -
Vivi5g02702 584 ProSiteProfiles TRIAD supradomain profile. 133 346 IPR044066 -
Vivi5g02702 584 SMART zf_4 559 583 IPR001876 -
Vivi5g02702 584 SUPERFAMILY RING/U-box 133 218 - -
Vivi5g02702 584 Pfam Ariadne domain 355 516 IPR045840 -
Vivi5g02702 584 SUPERFAMILY RING/U-box 207 275 - -
Vivi5g02702 584 ProSiteProfiles Zinc finger RING-type profile. 137 181 IPR001841 -
Vivi5g02702 584 MobiDBLite consensus disorder prediction 1 24 - -
Vivi5g02702 584 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 67 434 IPR031127 GO:0004842|GO:0016567
Vivi5g02702 584 MobiDBLite consensus disorder prediction 527 556 - -
Vivi5g02702 584 SUPERFAMILY RING/U-box 287 335 - -
Vivi5g02702 584 Gene3D - 264 519 - -
Vivi5g02702 584 FunFam RBR-type E3 ubiquitin transferase 269 519 - -
Vivi5g02702 584 CDD BRcat_RBR_ANKIB1 213 277 - -
Vivi5g02702 584 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 218 IPR013083 -
Vivi5g02702 584 ProSitePatterns Zinc finger RanBP2-type signature. 561 580 IPR001876 -
Vivi5g02702 584 SMART ibrneu5 206 268 IPR002867 GO:0008270
Vivi5g02702 584 SMART ibrneu5 281 342 IPR002867 GO:0008270
Vivi5g02702 584 FunFam RBR-type E3 ubiquitin transferase 131 220 - -
Vivi5g02702 584 Pfam IBR domain, a half RING-finger domain 206 268 IPR002867 GO:0008270
Vivi5g02702 584 Pfam IBR domain, a half RING-finger domain 285 333 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02702 Vivi-Chr5 113329040 113336303 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02702 18 584 ARIADNE family AT1G65430 69.459 0.0 823
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02702 K11968 - gmx:100810427 1031.94