Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02682 ATGTCGAAAACCACCGCATCCGCCGACGACTTCGAGACGCCGACACTAGACACGGAGTCTCCCACTCTGCTCCACTCCATTTCCGAACACGGCGGATACTCCTACGTGAGGATGGCGTCACTAGCCGCCGCCGGCGACGTTCGCGCGGCGGAGGCGGTTAGGGAGATGGCGTGGGAGCAACTTCATTCTGGACCGTGGCACTCGGTGTTGCCGGTGTGGCGTGACGCGTACTCGATGGCGTGTCTTCACGTGGCGAAGCATCACTATGGAAACGGTGAGTTTAAGGAGGCGCTTAGGGCTTTGGATATGGGGATCATCATGGGAGGGAGTCTGCTTAGAAAGGATTTGGACTCTGCCATTGGTAAGGTTTCTGAAAAGGCTAGGAACCTTAGGGTTTCTGATGGAAGCCACCAGGATTTTGGTAGCGACGATCATCTACTCGTTGATCTAGATTTTGACGTGTCTAAGGTGCTCCAGCTTTTACCTGTTAAGTCCCTTGCGTCAAAGCTTGTGGTGAAGAGGTCTGCCCTGTCGCTGGAGAAGTTCTTGAAAGATCATTTCCTGTCTGGCTCCCCGGTTATCATTAGTGATTGCATGGCGCACTGGCCAGCCAAGAAAAACTGGAATAATAAAGATTACTTGCTAAGAGTTGCTGGTGACCGCACTGTTCCAGTTGAGGTTGGGAAAAACTATTTATGCTCAGATTGGAAGCAAGAACTAGTTACATTTTCAGAGTTTCTTGAGCGGATAAGGTCCCATAGCTGTTCTCCCAGTGGTCCTACATATCTTGCTCAGCATCCATTATTTGATCAGATAAATGAGCTTCGGAAAGATATCTTTATTCCTGACTATTGTTTTGCTGGTGGAGGGGAGCTAAGATCTCTCAATGCTTGGTTTGGTCCAGCTGGAACAGTAACACCATTACACCATGATCCACATCATAACATACTTGCACAGGTTGTTGGGAAAAAATACATTAGGCTTTATCCAGCATCTTTATCTGAGGAGCTTTTCCCTTACTCAGAAACCATGCTTAGCAATTCCAGCCAGGTTGATTTAGATAACGTAGATGAAATGAAGTTTCCTAAGGTGCAAGACTTGGAATTTGTAGACTGTATTTTAGAGGAAGGTGAAATGTTATACATCCCGCCAAAGTGGTGGCACTATGTGCGGTCTTTAACTACCAGTTTATCAGTTAGCTTTTGGTGGAGTGAGGGTGAATGTTCTTCTCCATCCTAA 1239 0.4746 MSKTTASADDFETPTLDTESPTLLHSISEHGGYSYVRMASLAAAGDVRAAEAVREMAWEQLHSGPWHSVLPVWRDAYSMACLHVAKHHYGNGEFKEALRALDMGIIMGGSLLRKDLDSAIGKVSEKARNLRVSDGSHQDFGSDDHLLVDLDFDVSKVLQLLPVKSLASKLVVKRSALSLEKFLKDHFLSGSPVIISDCMAHWPAKKNWNNKDYLLRVAGDRTVPVEVGKNYLCSDWKQELVTFSEFLERIRSHSCSPSGPTYLAQHPLFDQINELRKDIFIPDYCFAGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYPASLSEELFPYSETMLSNSSQVDLDNVDEMKFPKVQDLEFVDCILEEGEMLYIPPKWWHYVRSLTTSLSVSFWWSEGECSSPS 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02682 412 ProSiteProfiles JmjC domain profile. 270 412 IPR003347 -
Vivi5g02682 412 SUPERFAMILY Clavaminate synthase-like 175 404 - -
Vivi5g02682 412 PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED 75 405 - -
Vivi5g02682 412 Pfam Cupin-like domain 181 404 IPR041667 -
Vivi5g02682 412 FunFam lysine-specific demethylase JMJ30 170 403 - -
Vivi5g02682 412 Gene3D Cupin 170 404 - -
Vivi5g02682 412 SMART cupin_9 261 408 IPR003347 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02682 165 403 Acyl Lipid Metabolism Gene Families AT3G45880 25.676 8.29e-14 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vivi5g02682 Cupin_8 1.3e-48 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02682 K24444 - gmx:100813075 696.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g02682 5 112805049 112809257 Vivi5g02682 5 112805049 112809257 ECH