Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02677 ATGGAGTCAGATCTTCAGCAGCATCCAACTATGTTTCTAGATCATCAGAATCATCACCAGCAGCAACAAATGAATACGGGATTGACACGGTTTAAATCTGCACCAAGTTCATATTTTTCGAATATAATTGATAAAGAGTTCTATGAGCATCTTTTTAACCGACCTTCTAGTCCTGAAACCGAGCGAGTTTTCGCTCGGTTTATGAATAGTCTTAGTGGTAGTGGTAGTGGCGGTGGCGGTGGTGGTGATGCTGAAAGTGCTTCTGCTACAGCTTCTGTAGCTGTAGGTGTAGCTGTAGCTGCTGGAGATGATTCATTGACTCAGAATCTAGTGTCAAGTTTTCAACAAGAACTTCTTCCTATAGTTAAGGAAGAGATTGATCAACAATCTCAAACTATGATGGCATCGATGAATAACGAAACTGTAGATCTTCAACAGCTTCAACGACAACAAAGCAATATGAATAATTATGGTTCCTCTGGTCCTCAGAAGTTTTACCAAAGCTCTGGAAGACCGCCTTTGCCGAATCAAATGAAGACTGGTAGAGGAAGTTGTTCTAATCTTATTAGACATGGTAGTTCACCTGCTGGATTGTTTTCTAACATTAACATTGAAACTGGTTTTGCTGTTATGAGAGGGATTGGAACGATCGGAACTGCTAACAGCACTAGCAAAGAAGCGAATTTTTCTTCTTCTGCGGTGCGGTTAAAGAGTGCTCCAGACTACTCATCGGTGTTAGGGGGCGAAATCGGGAATAGTAGCAATCCTCAGAACAATCTAGAATCGGAAGGTTTTGCTGAAACCCGGGGTGACGATTTCATCCCGGGTTTTCCTTTAGGTTCTACATGGGAAGACACTGCAATGATATCTGATAATATTACCGGTCTGAAAAGATACAGAGACGATGACGATGTAAAACCGTTTTCTGCAGGTTTAAATGTGGCTGATACTAAGAATGAAACAGGAGGCCATACTCCTGCTGCTCCTTTGGCTCATCAGACGAGTTTGCCTAATACCACGGCAGAATTGGCAGCCATTGAAAAGTTTTTACAATTCTCAGATTCTGTGCCGTGCAAAATCCGCGCCAAGCGCGGCTGCGCCACTCACCCGAGAAGCATTGCAGAAAGGGTTAGAAGAACTAAAATCAGCGAGCGAATGCGGAAACTACAAGATCTGGTGCCAAACATGGATAAGCAAACAAACACATCAGATATGTTGGACTTAGCTGTTGAGTATATTAAAGACCTACAAAAGCAAGTTGAGACTCTTTCAGAAAATAGAGCCAAGTGCACGTGCTCACATCACCAATAA 1311 0.4256 MESDLQQHPTMFLDHQNHHQQQQMNTGLTRFKSAPSSYFSNIIDKEFYEHLFNRPSSPETERVFARFMNSLSGSGSGGGGGGDAESASATASVAVGVAVAAGDDSLTQNLVSSFQQELLPIVKEEIDQQSQTMMASMNNETVDLQQLQRQQSNMNNYGSSGPQKFYQSSGRPPLPNQMKTGRGSCSNLIRHGSSPAGLFSNINIETGFAVMRGIGTIGTANSTSKEANFSSSAVRLKSAPDYSSVLGGEIGNSSNPQNNLESEGFAETRGDDFIPGFPLGSTWEDTAMISDNITGLKRYRDDDDVKPFSAGLNVADTKNETGGHTPAAPLAHQTSLPNTTAELAAIEKFLQFSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTSDMLDLAVEYIKDLQKQVETLSENRAKCTCSHHQ 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02677 436 Pfam Helix-loop-helix DNA-binding domain 371 417 IPR011598 GO:0046983
Vivi5g02677 436 Coils Coil 406 433 - -
Vivi5g02677 436 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 84 430 - -
Vivi5g02677 436 Gene3D - 367 435 IPR036638 GO:0046983
Vivi5g02677 436 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 366 416 IPR011598 GO:0046983
Vivi5g02677 436 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 369 430 IPR036638 GO:0046983
Vivi5g02677 436 FunFam Transcription factor bHLH130 family 367 435 - -
Vivi5g02677 436 SMART finulus 372 422 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02677 Vivi-Chr5 112729518 112732246 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02677 1 433 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 40.816 1.28e-76 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi5g02677 HLH 8.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02677 - - gmx:100803833 531.946