Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02676 ATGGAGTCAGATCTTCAGCAGCATCCAACTATGTTTCTAGATCATCAGAATCATCACCAGCAGCAACAAATGAATACGGGATTGACACGGTTTAAATCTGCACCAAGTTCATATTTTTCGAATATAATTGATAAAGAGTTCTATGAGCATCTTTTTAACCGACCTTCTAGTCCTGAAACCGAGCGAGTTTTCGCTCGGTTTATGAATAGTCTTAGTGGTAGTGGTAGTGGCGGTGGCGGTGGTGGTGATGCTGAAAGTGCTTCTGCTACAGCTTCTGTAGCTGTAGGTGTAGCTGTAGCTGCTGGAGATGATTCATTGACTCAGAATCTAGTGTCAAGTTTTCAACAAGAACTTCTTCCTATAGTTAAGGAAGAGATTGATCAACAATCTCAAACTATGATGGCATCGATGAATAACGAAACTGTAGATCTTCAACAGCTTCAACGACAACAAAGCAATATGAATAATTATGGTTCCTCTGGTCCTCAGAAGTTTTACCAAAGCTCTGGAAGACCGCCTTTGCCGAATCAAATGAAGACTGGTAGAGGAAGTTGTTCTAATCTTATTAGACATGGTAGTTCACCTGCTGGATTGTTTTCTAACATTAACATTGAAACTGGTTTTGCTGTTATGAGAGGGATTGGAACGATCGGAACTGCTAACAGCACTAGCAAAGAAGCGAATTTTTCTTCTTCTGCGGTGCGGTTAAAGAGTGCTCCAGACTACTCATCGGTGTTAGGGGGCGAAATCGGGAATAGTAGCAATCCTCAGAACAATCTAGAATCGGAAGGTTTTGCTGAAACCCGGGGTGACGATTTCATCCCGGGTTTTCCTTTAGGTTCTACATGGGAAGACACTGCAATGATATCTGATAATATTACCGGTCTGAAAAGATACAGAGACGATGACGATGTAAAACCGTTTTCTGCAGGTTTAAATGTGGCTGATACTAAGGTAAATGAAACAGGAGGCCATACTCCTGCTGCTCCTTTGGCTCATCAGACGAGTTTGCCTAATACCACGGCAGAATTGGCAGCCATTGAAAAGTTTTTACAATTCTCAGATTCTGTGCCGTGCAAAATCCGCGCCAAGCGCGGCTGCGCCACTCACCCGAGAAGCATTGCAGAAAGGGTTAGAAGAACTAAAATCAGCGAGCGAATGCGGAAACTACAAGATCTGGTGCCAAACATGGATAAGCAAACAAACACATCAGATATGTTGGACTTAGCTGTTGAGTATATTAAAGACCTACAAAAGCAAGTTGAGACTCTTTCAGAAAATAGAGCCAAGTGCACGTGCTCACATCACCAATAA 1314 0.4254 MESDLQQHPTMFLDHQNHHQQQQMNTGLTRFKSAPSSYFSNIIDKEFYEHLFNRPSSPETERVFARFMNSLSGSGSGGGGGGDAESASATASVAVGVAVAAGDDSLTQNLVSSFQQELLPIVKEEIDQQSQTMMASMNNETVDLQQLQRQQSNMNNYGSSGPQKFYQSSGRPPLPNQMKTGRGSCSNLIRHGSSPAGLFSNINIETGFAVMRGIGTIGTANSTSKEANFSSSAVRLKSAPDYSSVLGGEIGNSSNPQNNLESEGFAETRGDDFIPGFPLGSTWEDTAMISDNITGLKRYRDDDDVKPFSAGLNVADTKVNETGGHTPAAPLAHQTSLPNTTAELAAIEKFLQFSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTSDMLDLAVEYIKDLQKQVETLSENRAKCTCSHHQ 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02676 437 FunFam Transcription factor bHLH130 family 368 436 - -
Vivi5g02676 437 SMART finulus 373 423 IPR011598 GO:0046983
Vivi5g02676 437 Gene3D - 368 436 IPR036638 GO:0046983
Vivi5g02676 437 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 370 431 IPR036638 GO:0046983
Vivi5g02676 437 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 84 431 - -
Vivi5g02676 437 Coils Coil 407 434 - -
Vivi5g02676 437 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 367 417 IPR011598 GO:0046983
Vivi5g02676 437 Pfam Helix-loop-helix DNA-binding domain 372 418 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02676 Vivi-Chr5 112729513 112732246 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02676 1 434 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 40.724 5.85e-77 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi5g02676 HLH 8.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02676 - - gmx:100803833 527.324