Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02666 ATGGAGTCTGATCAATATGAACAAAGTGGTGGTGGTGGTGGTGGTGGTGATGATCAAGGTGATGCTCAAGCAAAACAAGTGATCAATATTCTTAGATCCTATGAGTGCAATTTCTGCAAGAGAGGCTTCTCTAATGCACAAGCACTAGGTGGTCACATGAATATCCATAGAAAAGACAAAGCAAAACTCAAGCAACAATCTTCAAACATGGAGGCAAATTCTAGTGAAGTTCAAGAGGTGAACAAGTTGTTATTACCAAACTTGAATTCTAGTATTGTGTTGCCTCAATCTCAACAACAAGATCAACAACACCATGCTCCTTCTAGAGATATTAATGAAGCTCTTATGACTCAACTGAGGCAACAACTTCCATTTTTTTCTGAATCACCAACAAAGAGTGAAATGCAAAAGCCACAACCATCACAAGGAGAAACTACTACTGCTGCTACTAGTACTACAGAAGAGGCTTTGTTGTTGTCTGGGGAAGATTCAATGGAGTTAGACCTAGAACTGAGATTAGGGCCTGAGCCACATGATTCATCATCATCAGCACCAACGGGTACCAGAAAATTCTTTTGA 579 0.4007 MESDQYEQSGGGGGGGDDQGDAQAKQVINILRSYECNFCKRGFSNAQALGGHMNIHRKDKAKLKQQSSNMEANSSEVQEVNKLLLPNLNSSIVLPQSQQQDQQHHAPSRDINEALMTQLRQQLPFFSESPTKSEMQKPQPSQGETTTAATSTTEEALLLSGEDSMELDLELRLGPEPHDSSSSAPTGTRKFF 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02666 192 MobiDBLite consensus disorder prediction 1 21 - -
Vivi5g02666 192 Gene3D Classic Zinc Finger 23 84 - -
Vivi5g02666 192 PANTHER OS07G0101800 PROTEIN 26 177 - -
Vivi5g02666 192 Pfam C2H2-type zinc finger 34 58 - -
Vivi5g02666 192 Coils Coil 53 73 - -
Vivi5g02666 192 ProSitePatterns Zinc finger C2H2 type domain signature. 36 56 IPR013087 -
Vivi5g02666 192 MobiDBLite consensus disorder prediction 126 158 - -
Vivi5g02666 192 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 61 IPR013087 -
Vivi5g02666 192 MobiDBLite consensus disorder prediction 126 192 - -
Vivi5g02666 192 SUPERFAMILY beta-beta-alpha zinc fingers 32 61 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02666 Vivi-Chr5 112191805 112192592 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02666 28 174 C2H2 Transcription Factor Family AT3G09290 37.333 8.19e-20 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi5g02666 zf-C2H2_6 1.7e-05 CL0361