Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02647 ATGGGAGTTCGTTGCTCTAAACACTCTCTATGCTGCTGGTCTTCAAAAACCAAATCAAATCATCAAAAGCTCTCTGATAATGATGATGATGGGAGCAAGAAGGTGAAGGATCCTTCGGTTGGTTTCACTGAGTTTAGTTTGGATCAACTTAGAGTGGCTACTGATGGATTTTCATCAGACAACATTGTTTCTGAACATGGTGAGAAAGCTCCTAATGTTGTTTATAGAGGTTGTCTTGAAGAGGATAGGTTGGTTGCTGTGAAGCGGTTCAACAAATCTGCTTGGCCTGATTCTCGACAATTCCTAGAGGAAGCACGAGCTGTTGGGGAGTTGAGGAGTGAAAGATTAGCTAACTTGGTTGGATGTTGCTGTGATGGAGATGAGAGATTGCTTGTTGCTGAGTTTATGCCGAATGAAACTCTCTCTAAACATCTTTTTCATTGGGAGGCTCAACCGATGAAATGGGCAATGAGGTTGAGAGTGGCTTTGTATTTAGCACAAGCCTTGGAATACTGCAATAGCAGAGGAAGGGCACTGTACCATGATCTTAATGCTTATAGAATTTTGTTTGATCAGGAAGGTAACCCTAAACTCTCTTGTTTTGGACTCATGAAAAACAGTAGAGATGGCAGAAGCTATAGTACAAATTTAGCCTTCACTCCTCCAGAGTACTTGAGAACAGGAAGAATCACCCCTGAGAGTGTGATCTACAGTTTTGGCACCTTATTGCTCGATCTTTTAAGTGGAAAGCATATCCCACCGAGTCATGCGCTTGACCTTATACGAGGCAAAAATTTTCAAATGCTGATGGACTCAGGTTTGGAAGGTCATTTTTCAAATGATGATGGAACTGAGATAGTGAGATTATCTTCGCGTTGTTTACAATATGAACCTCGCGAGAGACCAAATGCCAAGTCGCTTGTTACTGCTCTGACCCCCCTTCAGAAAGAAACTTCTGTTCTGTCATATGTTTTACTCGGCCTACCGGATAGGAGTCTATCATCAAAAGAAACAGTTTCATTAACGCCTTTTGGCGAAGCTTGTTCAAGAAGAGATCTTACTGCAATACATGAAATTTTGGAAAAGGTCGGGTACAAGGACGATGAACATGTTGCGAACGAGCTGTCCTTTCAAATGTGGACAAATCAAATACAAGATACACTAAACTTCAAGAAGCGCGGCGATTCCGCATTTATCGCAAAAGACTTCTCGACAGCCATTGACTACTATACACAATTCATCGACGGCGGAACAATGGTATCACCGACCGTGTACGCAAGGCGCTGCCTATGCTACATGATGAACGACATGGCACAAGAAGCACTTGGGGACGCAATGCAAGCTCAATCGATATCTCCGACTTGGCCTACTGCATTCTATCTTCAAGCAGTTGCACTGTCTAGCCTTGGTATGGACAATGATGCACAAGAAAGTCTCAAAGATGGCACAACACTGGAAACTAGAAACCATAGAAATTGA 1479 0.4273 MGVRCSKHSLCCWSSKTKSNHQKLSDNDDDGSKKVKDPSVGFTEFSLDQLRVATDGFSSDNIVSEHGEKAPNVVYRGCLEEDRLVAVKRFNKSAWPDSRQFLEEARAVGELRSERLANLVGCCCDGDERLLVAEFMPNETLSKHLFHWEAQPMKWAMRLRVALYLAQALEYCNSRGRALYHDLNAYRILFDQEGNPKLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRITPESVIYSFGTLLLDLLSGKHIPPSHALDLIRGKNFQMLMDSGLEGHFSNDDGTEIVRLSSRCLQYEPRERPNAKSLVTALTPLQKETSVLSYVLLGLPDRSLSSKETVSLTPFGEACSRRDLTAIHEILEKVGYKDDEHVANELSFQMWTNQIQDTLNFKKRGDSAFIAKDFSTAIDYYTQFIDGGTMVSPTVYARRCLCYMMNDMAQEALGDAMQAQSISPTWPTAFYLQAVALSSLGMDNDAQESLKDGTTLETRNHRN 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02647 492 Pfam Protein tyrosine and serine/threonine kinase 74 311 IPR001245 GO:0004672|GO:0006468
Vivi5g02647 492 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 11 491 IPR045845 GO:0004672|GO:0009742
Vivi5g02647 492 Gene3D Phosphorylase Kinase; domain 1 31 135 - -
Vivi5g02647 492 FunFam probable serine/threonine-protein kinase At4g35230 385 492 - -
Vivi5g02647 492 Gene3D Transferase(Phosphotransferase) domain 1 137 328 - -
Vivi5g02647 492 SUPERFAMILY Protein kinase-like (PK-like) 36 317 IPR011009 -
Vivi5g02647 492 FunFam probable serine/threonine-protein kinase At5g41260 137 328 - -
Vivi5g02647 492 ProSiteProfiles Protein kinase domain profile. 60 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g02647 492 Gene3D Tetratricopeptide repeat domain 385 492 IPR011990 GO:0005515
Vivi5g02647 492 SUPERFAMILY TPR-like 385 486 IPR011990 GO:0005515
Vivi5g02647 492 FunFam probable serine/threonine-protein kinase At4g35230 32 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02647 Vivi-Chr5 111783338 111787013 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02647 18 311 Glycoside Hydrolase AT3G07070 33.540 6.55e-42 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Vivi5g02647 PK_Tyr_Ser-Thr 3.1e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02647 - - gmx:732542 879.011