Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02643 ATGAGGAAACCAGAAGCTGCATCTGGGAAAAATAACACAAACAATAAGCTTAGAAAAGGGTTGTGGTCACCTGAGGAAGATGAGAAACTTATGAATTATATGTTGAACAGTGGACAAGGTTGTTGGAGTGATGTTGCTAGAAATGCTGGATTGCAGAGATGTGGAAAGAGTTGTAGGCTAAGATGGATTAATTACTTGAGACCTGATCTTAAACGTGGTGCATTTTCACCACAAGAAGAAGAACTTATCATCCATTTGCATTCTCTTCTTGGAAACAGATGGTCTCAAATAGCGGCGCGCTTACCAGGAAGAACAGACAACGAAATCAAGAACTTCTGGAACTCGACGATAAAGAAAAGACTCAAGAACATGTCGTCCAACACCTCGCCAAACCCAAGCGACGAATCCTCGTACGACGCTAACAAAGATCATCATAACATGGGAGGTTTCATAACATCATCAACGCAAGACCAACAACATATTGATCACAACCATTTTATGCCTATGTTCAATACTTCCTCACCACCTTCCATGCAAAACACAGTCTTCAATACCATCATCTCAGCTTCTTCCGGCGGCGGATTCTTCAATAACAACAACAATAATAATAATAATAATAATACGGGTTCATATTTCTCGCAGAATAACCATGACAGCAAAAGCACTTTTTATTTAGAAAAAGTGTTTGGGAGTGTAAATATCAATGGTGCAGAAAGAGAAGATGAGATTGGAATCTACAATGTTCCTCCTCTAGAGAGTGTTAACAGCACTATCACTTATGATGAACATACTATAAAAATGGAGAAGAACATTGCATTCAATGGAGAAGATACTTATAACAATAGTAGCTATAACTTTGATAACATTAACAACATTGTTAATGTTAGTAAGAGAAGTGATAATCAAAATAGAGGTGAAGATGAGGTGGAGAATTTATTTCATGGAGATTTATCTGTGGGAGATTGGGACTTGGAGGATTTGATGAAAGATGTTTCATCTTTTCCATTTCTTGATTTTTCAAACTGA 1026 0.3733 MRKPEAASGKNNTNNKLRKGLWSPEEDEKLMNYMLNSGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNMSSNTSPNPSDESSYDANKDHHNMGGFITSSTQDQQHIDHNHFMPMFNTSSPPSMQNTVFNTIISASSGGGFFNNNNNNNNNNNTGSYFSQNNHDSKSTFYLEKVFGSVNINGAEREDEIGIYNVPPLESVNSTITYDEHTIKMEKNIAFNGEDTYNNSSYNFDNINNIVNVSKRSDNQNRGEDEVENLFHGDLSVGDWDLEDLMKDVSSFPFLDFSN 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02643 341 PANTHER MYB DOMAIN PROTEIN 55 12 288 - -
Vivi5g02643 341 MobiDBLite consensus disorder prediction 122 136 - -
Vivi5g02643 341 SMART sant 18 68 IPR001005 -
Vivi5g02643 341 SMART sant 71 119 IPR001005 -
Vivi5g02643 341 MobiDBLite consensus disorder prediction 1 20 - -
Vivi5g02643 341 Pfam Myb-like DNA-binding domain 72 115 IPR001005 -
Vivi5g02643 341 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Vivi5g02643 341 CDD SANT 22 66 IPR001005 -
Vivi5g02643 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Vivi5g02643 341 Gene3D - 16 72 - -
Vivi5g02643 341 ProSiteProfiles Myb-like domain profile. 14 66 IPR001005 -
Vivi5g02643 341 MobiDBLite consensus disorder prediction 122 146 - -
Vivi5g02643 341 FunFam Transcription factor MYB46 73 143 - -
Vivi5g02643 341 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Vivi5g02643 341 FunFam MYB transcription factor 16 72 - -
Vivi5g02643 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 66 IPR017930 -
Vivi5g02643 341 CDD SANT 74 114 IPR001005 -
Vivi5g02643 341 SUPERFAMILY Homeodomain-like 17 113 IPR009057 -
Vivi5g02643 341 Gene3D - 73 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02643 Vivi-Chr5 111571401 111574515 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02643 3 339 MYB Transcription Factor Family AT3G08500 46.348 3.25e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi5g02643 Myb_DNA-binding 4.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02643 K09422 - gmx:100786151 389.423