Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02625 ATGAGTTGGAACCCGCACATGGAAGTTCATTACAATAACATCAGCTATCCTTATAATACAGCAGGAAGCTTTATTGAATATTTTGAAGGCCTCACTTATGAACATGTTAACTTCATTTTTTCCGGTGCATCACATGCTCAGGAGAGTCCGTACCCTTCAAATTCAAACTTCTACAAATTTGGATTATCAGAGCCTGAGAATAATTCATACTATCGCTACAATCATGGATATGAGATAAATCAGCATGAACCACTAGTGGATGAGTATAGGAGGCCTTCAGAAAACTCCTCAACGATCAGTGAACCAAGTCTGGCAGTCAGCACAGAATGGGGCGATGACAGGAACACTGAAGTTCAAGACAATTCTATTGAATGCCCTCGAAGACATCATAGTAATTCCAATGATTCTCAGGTCATTTGGCAAGACAATATTGATCCCGACAACATGACCTATGAGGAATTACTTGAATTAGGTGAGGCTGTTGGAACTCAAAGCCGTGGTCTCACCCAAGAACAGATCGCCTTGCTTCCAGTTTCAAAGTTCAAGTGTGGGTTCTTCTTGAGGAAGAAGTCCCGGGATGAGAGATGCGTGATTTGCCAGATGGAATATAAAAGAGGCAACAAGAGGATCACTTTACCATGTAAACATGTTTATCATGCTACTTGTGGGAACAAATGGCTTAGCATTAATAAGGCTTGCCCTATATGTTATACAGAAGTATTTGCCGACAAATCAAAACAAAAATAA 747 0.4029 MSWNPHMEVHYNNISYPYNTAGSFIEYFEGLTYEHVNFIFSGASHAQESPYPSNSNFYKFGLSEPENNSYYRYNHGYEINQHEPLVDEYRRPSENSSTISEPSLAVSTEWGDDRNTEVQDNSIECPRRHHSNSNDSQVIWQDNIDPDNMTYEELLELGEAVGTQSRGLTQEQIALLPVSKFKCGFFLRKKSRDERCVICQMEYKRGNKRITLPCKHVYHATCGNKWLSINKACPICYTEVFADKSKQK 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02625 248 SUPERFAMILY RING/U-box 192 243 - -
Vivi5g02625 248 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 242 IPR033276 GO:0004842|GO:0016567|GO:0046621
Vivi5g02625 248 ProSiteProfiles Zinc finger RING-type profile. 196 236 IPR001841 -
Vivi5g02625 248 Pfam Ring finger domain 195 236 IPR001841 -
Vivi5g02625 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 242 IPR013083 -
Vivi5g02625 248 SMART ring_2 196 236 IPR001841 -
Vivi5g02625 248 FunFam E3 ubiquitin ligase BIG BROTHER 158 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02625 Vivi-Chr5 110983834 110988014 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02625 5 245 C3H Transcription Factor Family AT3G63530 43.145 1.95e-64 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02625 K19045 - gmx:100793907 483.796