Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02620 ATGGTGGCCAAAAACCTAGAAACAACCATGGTGGCCAAAATTCTCTACATTGCCTTCATCATCTACACAATGTCGGTCATTGAAGCTAGAATTCCAGGAATTTACTCTGGTGGTCAATGGCAAACTGCTCACGCTACTTTTTACGGCGGATCTGATGCTTCCGGCACCATGGGAGGAGCATGCGGCTATGGAAATTTGTACAGTCAGGGCTACGGAGTGAACACGGCAGCATTGAGCACTGCTTTGTTCAACAGTGGTCTGAGCTGTGGTGCGTGTTTTGAGATAAAGTGTGCTAACGACAGAGAATGGTGTCATTCGGGAAGTCCTTCCATTTTAATCACTGCAACTAACTTTTGTCCTCCCAATTTCGCTCTTCCAAATGATAATGGCGGTTGGTGTAACCCTCCTCGTCCTCATTTTGATCTTGCCATGCCTATGTTTCTTAAGATTGCTGAGTATCGCGCCGGTATCGTCCCAGTTGCTTATCGCAGGGTGCCATGTAGAAAGCGCGGGGGAATAAGATTCACCGTGAATGGATTCCGTTACTTTAACCTGGTGCTAATTAGCAACGTGGCGGGTGCTGGTGATATCGTGCGCGCTTACGTGAAAGGAACCCGAACCGGGTGGATGCCACTGAGCCGAAACTGGGGTCAGAACTGGCAATCAAACGCGGTTTTGGTGGGCCAGGCTCTGTCTTTCCGTGTCTCAAGCAGTGACCGTAGATCTTCAACTTCATGGAATATTGCTCCTCCTAATTGGCAATTTGGTCAAACTTTCACTGGAAAAAATTTTAGAGTCTAA 801 0.4769 MVAKNLETTMVAKILYIAFIIYTMSVIEARIPGIYSGGQWQTAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNSGLSCGACFEIKCANDREWCHSGSPSILITATNFCPPNFALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKRGGIRFTVNGFRYFNLVLISNVAGAGDIVRAYVKGTRTGWMPLSRNWGQNWQSNAVLVGQALSFRVSSSDRRSSTSWNIAPPNWQFGQTFTGKNFRV 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02620 266 FunFam Expansin 172 264 - -
Vivi5g02620 266 PRINTS Expansin/Lol pI family signature 39 54 IPR007118 GO:0005576
Vivi5g02620 266 PRINTS Expansin/Lol pI family signature 209 223 IPR007118 GO:0005576
Vivi5g02620 266 PRINTS Expansin/Lol pI family signature 79 97 IPR007118 GO:0005576
Vivi5g02620 266 PRINTS Expansin/Lol pI family signature 155 171 IPR007118 GO:0005576
Vivi5g02620 266 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576
Vivi5g02620 266 PRINTS Expansin/Lol pI family signature 247 261 IPR007118 GO:0005576
Vivi5g02620 266 SMART dpbb_1 75 162 IPR007112 -
Vivi5g02620 266 PRINTS Expansin signature 171 183 IPR002963 GO:0009664
Vivi5g02620 266 PRINTS Expansin signature 130 147 IPR002963 GO:0009664
Vivi5g02620 266 PRINTS Expansin signature 97 108 IPR002963 GO:0009664
Vivi5g02620 266 PRINTS Expansin signature 111 121 IPR002963 GO:0009664
Vivi5g02620 266 PRINTS Expansin signature 183 204 IPR002963 GO:0009664
Vivi5g02620 266 PRINTS Expansin signature 218 239 IPR002963 GO:0009664
Vivi5g02620 266 PRINTS Expansin signature 247 263 IPR002963 GO:0009664
Vivi5g02620 266 PRINTS Expansin signature 147 160 IPR002963 GO:0009664
Vivi5g02620 266 PRINTS Expansin signature 70 84 IPR002963 GO:0009664
Vivi5g02620 266 PANTHER EXPANSIN-A15 26 264 IPR002963 GO:0009664
Vivi5g02620 266 Gene3D - 172 264 IPR036749 -
Vivi5g02620 266 Pfam Expansin C-terminal domain 173 250 IPR007117 -
Vivi5g02620 266 SUPERFAMILY Barwin-like endoglucanases 39 190 IPR036908 -
Vivi5g02620 266 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 182 261 IPR007117 -
Vivi5g02620 266 Gene3D - 28 168 IPR036908 -
Vivi5g02620 266 SUPERFAMILY PHL pollen allergen 169 261 IPR036749 -
Vivi5g02620 266 CDD DPBB_EXPA_N 39 167 - -
Vivi5g02620 266 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 58 172 IPR007112 -
Vivi5g02620 266 FunFam Expansin 29 168 - -
Vivi5g02620 266 Pfam Lytic transglycolase 75 162 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02620 Vivi-Chr5 110835024 110837130 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02620 14 266 Expansin Gene Family AT2G39700 84.190 7.66e-165 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02620 - - gmx:100809139 496.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g02065 2 96924678 96927015 Vivi5g02620 5 110835024 110837130 PCT