Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02617 ATGGGAATTAATATTGTTTCTGCCATGGGAGTTTGTTTGGGAAGCCAAGTCAAAGCTGATGGCCAAACTAATTCTGGGTTAAGTTCAAAGAGTGTGAATCTTGATACAGAAGATATAATTCTCACTAGCCCAACTAGTGAGATTGAGATATCGGCCGGATCGGTGTCTCGGACTGATCCGTGTGTGGGGGAGATTTTGCAGTCATCGAATTTGAAGAGCTTTGCTTTGACAGAACTTCAGGCTGCCACGAGAAATTTTCGTGTAGACAGTGTGTTAGGAGATGGAGGATTTGGATCAGTTTTTAAGGGTTGGATTGATGAAAACTCGGCTTCTGCTGCTAAGCCTGGCAAAGGCATTGCTGTTGCTGTCAAAAAACTTTGTCAGGATGGGCTCAAAGGTCATGAGGAGATGTTGGCTGATGTCAATTATCTAGGCCAACTTTCACATCCTCATCTAGTGAAACTGATTGGATACTGCCTTGAGGATGAAAACAAGCTTCTGGTCTACGAATTTATGCCGCGTGGCAGCTTGGAGAATCACTTGTTTCTCAGAGGCTCATATTTTCAACCTCTTTCTTGGTGCCTACGTTTGAAGGTTGCTATTGGTGTTGCGAAAGGCCTCGCATTTCTTCACAGTGCGGATAAAAAAGTGATATACCGAAATTTCAAGACTTCAAATGTCTTGCTAGATTCAAATTATAATGCAAAACTTTCTAATTTTGGGCTGGCAAAGGTCGGGTCCGCGGTTGATAAAGGTCGTGTCTCCACCAGACTAACCTATGGATATGCAGCTCCAGAATACGTAGCCACCGGTATTCACAGTGCTAAGAGTGGTGTCTATAGTTTTGGAGTTGTCCTATTGGAAATATTATCAGGGAGGAGAGTTGTTGACAAGAACAGACCACAAAGACAACAGAATTTGGTGGAATGGGCTAAGCCTTATCTGCCCAGCAAGCGTAAGATTTTGCGCGTAATGGATAACCGTCTTGAAGGCCAATATGAACTAGACGATGCATATAAGGTTGCTACACTCTCCCTAAGGTGCCTCGCAACAGAAGCCAAGTTGAGACCAAACATGGATGAGGTTGTCACTAATTTGGAGCTGTTGCAGGTTCAAAATGTAGATGGGTGCAATCAGAATCATTTGCGTAGAAGAAGTGCTGATGATGTTACCCGTGTTAGAACAGCCACGGCTTATCCTCAACGCTCTACGTCTATGCTCTGTACATGA 1230 0.4382 MGINIVSAMGVCLGSQVKADGQTNSGLSSKSVNLDTEDIILTSPTSEIEISAGSVSRTDPCVGEILQSSNLKSFALTELQAATRNFRVDSVLGDGGFGSVFKGWIDENSASAAKPGKGIAVAVKKLCQDGLKGHEEMLADVNYLGQLSHPHLVKLIGYCLEDENKLLVYEFMPRGSLENHLFLRGSYFQPLSWCLRLKVAIGVAKGLAFLHSADKKVIYRNFKTSNVLLDSNYNAKLSNFGLAKVGSAVDKGRVSTRLTYGYAAPEYVATGIHSAKSGVYSFGVVLLEILSGRRVVDKNRPQRQQNLVEWAKPYLPSKRKILRVMDNRLEGQYELDDAYKVATLSLRCLATEAKLRPNMDEVVTNLELLQVQNVDGCNQNHLRRRSADDVTRVRTATAYPQRSTSMLCT 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02617 409 FunFam Serine/threonine-protein kinase BIK1 53 171 - -
Vivi5g02617 409 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 172 379 - -
Vivi5g02617 409 PANTHER OS01G0588500 PROTEIN-RELATED 40 370 - -
Vivi5g02617 409 Gene3D Transferase(Phosphotransferase) domain 1 172 391 - -
Vivi5g02617 409 ProSitePatterns Protein kinases ATP-binding region signature. 92 125 IPR017441 GO:0005524
Vivi5g02617 409 Pfam Protein tyrosine and serine/threonine kinase 88 366 IPR001245 GO:0004672|GO:0006468
Vivi5g02617 409 ProSiteProfiles Protein kinase domain profile. 86 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g02617 409 SUPERFAMILY Protein kinase-like (PK-like) 67 372 IPR011009 -
Vivi5g02617 409 Gene3D Phosphorylase Kinase; domain 1 63 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02617 Vivi-Chr5 110639140 110642253 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02617 64 369 Glycoside Hydrolase AT3G07070 45.631 7.42e-89 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vivi5g02617 PK_Tyr_Ser-Thr 3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02617 - - gmx:100798404 536.569