Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02600 ATGGAAGGTGAGAAAGTAAACGCTATAATTGACCTAGTCAACGAGATTTCCAACATCTCTGACTTCAGGCCTATGGTGAAGAAACAGTATTGCAATTTAGCACGAAGGTTGAAGCTTTTGATTCCTTTGTTCGAGGAGATTCGGGATATGCATGATTCAATCCCTGATTACACTTCAAAAGCTGTGATTTTGTTTAAAGAAGCTCTTGAATCAGCTAGGGAACTTCTCAGATTCGGAAGTGAAGGAAGCAAGATTTACATGGTCCTCGAGAGAGACCAGATTATGAAAAAATTCTATGACGTGACAGCTCGGTTGGAACAATCACTGGATGAAATTTCCTATGATAAACTTGACATATCAGATGAAGTAAAAGAGCAGGTTGAACTAGTTCTTGCTCAGTTTCGAAGAGCAAAAGGGAGAGTTGATGATCCAGATATCAAGTTGTATGAAGATGTGTCATCCCTTTACAACAATAGCAGTGACGTAACTACAGATCCAGCTGTTCTAAGTCAATTAGCAGACAAGTTGCAATTGATGGGAATAGCCGATCTTACACAAGAATCACTCGCTTTGCATGAGATGGTGGCAGTAAGTAGTGGGGATCCAGGGGCACGCATTGAGAAAATGTCAATGTTATTGAAGAAGATAAAGGATCATGTGCAAATAGAAAACCTAGTCAAGGATGATACTAAAATAGCAAAGGGAGTTTCTTCCGGATTTCAAGGACTAGGGAAAAATGATATGAATCATCAGGCCTCTGTTATCCCAAGTGATTTTAAATGTCCGATTTCCTTGGAATTGATGATTGATCCTGTCATTGTTTCAACAGGACAGACTTATGAGCGTTCCTGTATTGAGAAGTGGTTGCAAGACGGGCACATGACATGCCCAAAAACGCAGCAGTCTCTCACCAGTACTGTTCTCACACCCAACTATGTCTTACGAAGCCTGATAGAACAATGGTGTGAAGCCAATGGCATAGAGCCACCAAAACGACCCAGCACTTCTGAGCCAAGTAAATCAGCATCAGCTTGCTCCCCAGCGGAGCGAAGTAAGATTGAAAATCTAATTCAAAAGCTCATATCTGGCAGTCCTGAAGACCAGAGATCAGCGGCTGGCGAGATTCGCCTTCTTGCAAAACGCAATGCAGATAATCGTGTAGCTATTGCTGAAGCTGGTGCAATACCTCTCCTCGTTGGTCTCCTCTCCGTGCCCGACTCCCGAACTCAAGAGAATGCTGTGACAGCGCTTCTGAATCTCTCCATATATGAGAGTAACAAAGGAAGCATTGTCTCTTCAGGAGCAGTTCCAGGCATAGTTCATGTGCTGAAGAGGGGAAGCATGGAAGCTCGGGAAAACGCGGCTGCAACACTTTTCAGCCTTTCAGTTATAGATGAAAATAAGGTCACAATTGGTTCTTCAGGAGCCATAACACCACTGGTGACACTGCTGAGTGAGGGTACCCAAAGGGGTAAGAAAGATGCTGCAACAGCACTCTTCAATCTGTGCATTTACCAAGGAAACAAGGGAAAGGCGGTGAGGGCTGGTGTTATTCCCACGCTGATGAGACTTCTGACAGAACCTAGCGGAGGAATGGTGGATGAAGCATTGGCCATTTTGGCAATTTTGTCTAGTCATCCTGAAGGGAAGTCTGCCATTGGTGCTGCAGAGGCAGTGCCGGTGTTGGTAGAGTTTATTGGGAGTGGATCCCCAAGGAACAAAGAGAACGCAGCTGCGGTATTAGTTCACCTTTGTTCTGGCGATCGACAATACATAGCGCAGGCAGAGGAGCTGGGGGTGATGGCTCCGTTGTTAGAATTGGCTCAAAACGGTACTGACAGAGGCAAAAGAAAGGCAACACAATTGATAGAGCGTATGAGCAGGATCCGTGAGCAAGAACAGCACGAAGTTCAGATACAAGCTGAACTTCTACCTCAGAATGACGATATCCAACCACCACCTTTGATCATTAACCTCGATATTGACACCTGA 1992 0.4468 MEGEKVNAIIDLVNEISNISDFRPMVKKQYCNLARRLKLLIPLFEEIRDMHDSIPDYTSKAVILFKEALESARELLRFGSEGSKIYMVLERDQIMKKFYDVTARLEQSLDEISYDKLDISDEVKEQVELVLAQFRRAKGRVDDPDIKLYEDVSSLYNNSSDVTTDPAVLSQLADKLQLMGIADLTQESLALHEMVAVSSGDPGARIEKMSMLLKKIKDHVQIENLVKDDTKIAKGVSSGFQGLGKNDMNHQASVIPSDFKCPISLELMIDPVIVSTGQTYERSCIEKWLQDGHMTCPKTQQSLTSTVLTPNYVLRSLIEQWCEANGIEPPKRPSTSEPSKSASACSPAERSKIENLIQKLISGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSVPDSRTQENAVTALLNLSIYESNKGSIVSSGAVPGIVHVLKRGSMEARENAAATLFSLSVIDENKVTIGSSGAITPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVIPTLMRLLTEPSGGMVDEALAILAILSSHPEGKSAIGAAEAVPVLVEFIGSGSPRNKENAAAVLVHLCSGDRQYIAQAEELGVMAPLLELAQNGTDRGKRKATQLIERMSRIREQEQHEVQIQAELLPQNDDIQPPPLIINLDIDT 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02600 663 CDD MLKL_NTD 6 135 - -
Vivi5g02600 663 ProSiteProfiles U-box domain profile. 254 328 IPR003613 GO:0004842|GO:0016567
Vivi5g02600 663 SMART arm_5 546 586 IPR000225 GO:0005515
Vivi5g02600 663 SMART arm_5 588 628 IPR000225 GO:0005515
Vivi5g02600 663 SMART arm_5 382 422 IPR000225 GO:0005515
Vivi5g02600 663 SMART arm_5 464 504 IPR000225 GO:0005515
Vivi5g02600 663 SMART arm_5 505 545 IPR000225 GO:0005515
Vivi5g02600 663 SMART arm_5 423 463 IPR000225 GO:0005515
Vivi5g02600 663 CDD RING-Ubox_PUB 256 308 IPR045210 -
Vivi5g02600 663 PANTHER U BOX DOMAIN-CONTAINING 25 627 - -
Vivi5g02600 663 FunFam RING-type E3 ubiquitin transferase 254 328 - -
Vivi5g02600 663 SUPERFAMILY RING/U-box 245 331 - -
Vivi5g02600 663 SMART Ubox_2 258 321 IPR003613 GO:0004842|GO:0016567
Vivi5g02600 663 MobiDBLite consensus disorder prediction 332 348 - -
Vivi5g02600 663 Pfam U-box domain 255 325 IPR003613 GO:0004842|GO:0016567
Vivi5g02600 663 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 328 IPR013083 -
Vivi5g02600 663 Pfam Armadillo/beta-catenin-like repeat 465 503 IPR000225 GO:0005515
Vivi5g02600 663 Pfam Armadillo/beta-catenin-like repeat 382 421 IPR000225 GO:0005515
Vivi5g02600 663 Pfam Armadillo/beta-catenin-like repeat 547 586 IPR000225 GO:0005515
Vivi5g02600 663 Gene3D - 492 638 IPR011989 -
Vivi5g02600 663 FunFam RING-type E3 ubiquitin transferase 336 632 - -
Vivi5g02600 663 FunFam RING-type E3 ubiquitin transferase 2 115 - -
Vivi5g02600 663 Gene3D - 2 115 IPR036537 GO:0007166
Vivi5g02600 663 MobiDBLite consensus disorder prediction 328 348 - -
Vivi5g02600 663 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 393 435 IPR000225 GO:0005515
Vivi5g02600 663 Gene3D - 340 490 IPR011989 -
Vivi5g02600 663 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 516 558 IPR000225 GO:0005515
Vivi5g02600 663 SUPERFAMILY ARM repeat 353 645 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02600 Vivi-Chr5 109389621 109394554 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02600 1 642 U-box Gene Family AT3G46510 68.527 0.0 879
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02600 - - gmx:100812160 1061.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g02600 5 109389621 109394554 Vivi5g02600 5 109389621 109394554 ECH