Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02587 ATGGAGAGTGAGAGTGATCAGAATAATGAGATTGTTGAAGAAGAGTCGAATGGAAATAATAATAACACTACTATTTCATCGAGTTCACGATGGAATCCAACCAAGGAACAAATAACTGTTTTGGAGAATTTGTATAAGCAAGGTATAAAGACACCAAGTGCTGATGAAATACAACAGATAACCGCTAGGCTTAGAGCCTATGGTCACATCGAAGGAAAGAATGTCTTCTACTGGTTTCAGAATCACAAAGCTAGACAAAGACAGAAGCAGAAGCAAGAAAATATCGCTTATTTCAATCGGTTTCTTCATAGACCTCAACCCATTTTTCCTTCACCACTTTGTCCCAATACTATCTGCAGACCATATTGCGTACCACAGCAACACAGTCATGAATTCAGCTATTACACTCAAAACCCAAAAGTGCTTCTACCTGCAGTAGGTTATAGAAGGAACCAAGGTGATAAAGTTATGTCAAACTCAAACGTCTGCAATAATCCAATGGTATATGAAAAGAACATGCAACCTAGAATGTCGGAATATGAAACGTTGGATCTGTTTCCTGTACATCCAACTGGCATACTGGAAGGGAAAAAAACTGACCAGGTGTCTTCTATTGTTTCAGTTTCCGCTGATACTTCAACTGATACAAACTCTGGTTCTCCTCATCATGTTATCAATCAAGAAAAAAAACCCTTCTTTGACTTCTTTTAA 711 0.3797 MESESDQNNEIVEEESNGNNNNTTISSSSRWNPTKEQITVLENLYKQGIKTPSADEIQQITARLRAYGHIEGKNVFYWFQNHKARQRQKQKQENIAYFNRFLHRPQPIFPSPLCPNTICRPYCVPQQHSHEFSYYTQNPKVLLPAVGYRRNQGDKVMSNSNVCNNPMVYEKNMQPRMSEYETLDLFPVHPTGILEGKKTDQVSSIVSVSADTSTDTNSGSPHHVINQEKKPFFDFF 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02587 236 SUPERFAMILY Homeodomain-like 28 94 IPR009057 -
Vivi5g02587 236 SMART HOX_1 26 93 IPR001356 GO:0003677
Vivi5g02587 236 MobiDBLite consensus disorder prediction 1 31 - -
Vivi5g02587 236 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 7 221 IPR044555 GO:0003700|GO:0099402
Vivi5g02587 236 ProSiteProfiles 'Homeobox' domain profile. 24 89 IPR001356 GO:0003677
Vivi5g02587 236 FunFam WUSCHEL-related homeobox 4 28 95 - -
Vivi5g02587 236 MobiDBLite consensus disorder prediction 12 31 - -
Vivi5g02587 236 CDD homeodomain 30 90 IPR001356 GO:0003677
Vivi5g02587 236 Gene3D - 28 96 - -
Vivi5g02587 236 Pfam Homeodomain 28 88 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02587 Vivi-Chr5 108631891 108632731 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02587 19 236 Wox Gene Family AT5G59340 43.200 9.50e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vivi5g02587 Homeodomain 5.3e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02587 - - vvo:131605144 461.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g02587 5 108631891 108632731 Vivi5g02587 5 108631891 108632731 ECH