Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02568 ATGCGCACAGCCACCACGATAGCGAATAACATAACTCTTCTTCTCCAATGTTCACCCTTACCCTTACCTCAATTGTTCCTACGCGTGCGCCATCATTCATCTACCAAATTGTTCGTCGCAGGGCTTTCGTATAACACAAATGAAACGGTCCTAAGAGACACATTTGAACAACATGGGGAAATCATTGAAGTTAAAGTAATATGTGACCACAAAACTGGGGAGTCAAAAGAGTATGGATTTGTTAGGTTCAATTCTGAAACTGCAGCTGCCACGGCTCGCAAAGAATTGCACGGAAAAATAGTGGACGGCAGAAGAATTCGAGTGGGTTATGCGCACAAAGGGTGA 345 0.4406 MRTATTIANNITLLLQCSPLPLPQLFLRVRHHSSTKLFVAGLSYNTNETVLRDTFEQHGEIIEVKVICDHKTGESKEYGFVRFNSETAAATARKELHGKIVDGRRIRVGYAHKG 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02568 114 Gene3D - 23 114 IPR012677 -
Vivi5g02568 114 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 113 IPR000504 GO:0003723
Vivi5g02568 114 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 31 113 - -
Vivi5g02568 114 SMART rrm1_1 36 109 IPR000504 GO:0003723
Vivi5g02568 114 SUPERFAMILY RNA-binding domain, RBD 13 113 IPR035979 GO:0003676
Vivi5g02568 114 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 107 IPR000504 GO:0003723
Vivi5g02568 114 FunFam Glycine-rich RNA-binding protein 2, mitochondrial 23 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02568 Vivi-Chr5 108412002 108412853 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02568 35 113 Eukaryotic Initiation Factors Gene Family AT3G16380 40.506 2.19e-12 60.1