Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02560 ATGTCTTTACAAAACAAGGGATTCTGGATGGTAAAAGGGTCTGGACATGTTAGTGACAGAGAGCCGGTATTTGATAATCCTTCCAAAACTGAACCAAAACGATCTCATCAATGGTTAATTGATGCAACTGAAGGGGATTATTTGCCAAACAAGAAGCAAGCAATAGAAGATGCAAATGAAAGATCTAGTTCAGGATTTTCAAATGTAAATTTTACTCCGTGGGAAAACAATCATAATTTCAATTCAGTCCCAAACCAATTTATTGATCGGTTATTTGGATCTGAAACTAGGCCCATCAATTTCTCTGAAAAGAATACTTATGTTTCTGCTGATGATTCTAATGTGAGGTCAAATTTGATCTCCAATCATTATGGAGATGGTGCATCTTTTGGCTTGTCTATATCTCATTCTGCCGAAGATTCTGAACCATGTATGACTTTTGGGGGAATCAAGAAAGTCAAAATAAATCAAGTTAAGGATTTCGACATTGTACAAGCTCCAGAGGGACATGACTTTGATAGGCAGAGTAAGAGTGATCTACATCAAGCCTATAATGGGGAAATTGAGACGAGATCTGGGTCAATAGGGCAAGACTTTGACAAGGATGGCAATGCTGCTTTACTGGGACTCACCTATGGCAGAGGGGATGCCCATATAAGATCGTTTGGTACCCCCTTTGGCAAAGGAGATAACACAGTCCTATCAATGGGTGAGTCCTGTAATAAAGAGGACAAAAATATAATTTCTTTTGGTGGGTTCCCAGATGAACGGAGTGATATCTCTGTGGGCAGGGCTACTACAGACTATGAACAATTATATAATCAATCATCAGTTCATGTGTCAACAACAGCCTATGAGAAAGAGTTGGATGCATCAAATTCCGGTGTAGTTGAAACTACTCCTTCGGTGGCAACAATAAAGCCTGAATCTGTGACCAAGAATAAACAAGATATCAAAAGGAAAGAATCTCCCACCACCTTCCCAACTAATGTCAGGAGCCTGATATCTACTGGTATGCTTGATGGTGTTCCTGTGAAGTATGTCTCAGTGGCGCGAGAGGAACTTCGTGGGATTATAAAAGGCTCTACCTATCTTTGTGGGTGTCAGTCATGTAACTATTCTAAGGGTCTCAATGCTTATGAGTTTGAAAGGCATGCCGGTTGCAAAACAAAACATCCAAACAATCATATTTATTTCGAGAATGGGAAGACCATTTATCAAATAGTACAGGAATTGAGGAATTCTCCGGAGAGTTCATTGTTTGACACAATTCAAACTATTTTCGGTGCACCAATTAATCAGAAGGCATTTCGCATTTGGAAAGAATCATTTCAAGCAGCAACACGCGAGCTTCAGCGTATTTATGGAAATGAAAGACGCAACCTCTAA 1389 0.3967 MSLQNKGFWMVKGSGHVSDREPVFDNPSKTEPKRSHQWLIDATEGDYLPNKKQAIEDANERSSSGFSNVNFTPWENNHNFNSVPNQFIDRLFGSETRPINFSEKNTYVSADDSNVRSNLISNHYGDGASFGLSISHSAEDSEPCMTFGGIKKVKINQVKDFDIVQAPEGHDFDRQSKSDLHQAYNGEIETRSGSIGQDFDKDGNAALLGLTYGRGDAHIRSFGTPFGKGDNTVLSMGESCNKEDKNIISFGGFPDERSDISVGRATTDYEQLYNQSSVHVSTTAYEKELDASNSGVVETTPSVATIKPESVTKNKQDIKRKESPTTFPTNVRSLISTGMLDGVPVKYVSVAREELRGIIKGSTYLCGCQSCNYSKGLNAYEFERHAGCKTKHPNNHIYFENGKTIYQIVQELRNSPESSLFDTIQTIFGAPINQKAFRIWKESFQAATRELQRIYGNERRNL 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02560 462 Pfam Tify domain binding domain 357 412 IPR032308 -
Vivi5g02560 462 PANTHER AUTOIMMUNE REGULATOR 9 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02560 Vivi-Chr5 108131772 108135431 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02560 308 445 PHD Transcription Factor Family AT3G53680 49.645 1.13e-38 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02560 - - tpra:123918512 765.763