Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02554 ATGCCAATTTCAAGAATTGCAATTGGAAGTCCTTCTGAGTTTGGCAAAGCTGATGCACTCAAAGCTGCACTAGCCGAGTTCATTTCAATGCTCATTTTTGTGTTTGCAGGAGAAGGCTCTGGCATGGCTTATAATAAGCTTACGGACAATGGTGCAGCAACACCAGCTGGGTTGGTGGCTGCATCACTATCACACGCTTTTGCGCTTTTTGTTGCGGTTTCTGTTGGTGCTAACATCTCTGGTGGACATGTTAACCCTGCTGTTACTTTTGGTGCATTCATTGGTGGACATATTACACTTGTTAGAGGTGTTTTGTATTGGATTGCTCAGTTGCTTGGTTCTGTGGTTGCTTGCTTGCTCCTTAAAATTGCCACTGGTGGATTGGAAACGTCTGCATTTTCATTATCTTCTGGAGTAGGAGCAACAAATGCACTTGTGTTTGAGATTGTGATGACTTTTGGTTTAGTCTACACAGTGTATGCAACTGCAATAGATCCAAAAAATGGTAGTCTTGGAACAATTGCTCCAATTGCAATTGGTTTCATTGTTGGTGCCAACATTTTGGCAGGTGGGGCTTTTGATGGTGCTTCTATGAACCCAGCAGTTTCTTTCGGGCCTGCTGTTGTTAGCTGGACTTGGGCTAATCATTGGGTTTATTGGGTTGGGCCATTGATTGGTTCTGCTATTGCTGCTGTTGTTTATGAGATTTTCTTCATCACCCCTGGCTCTTATGAACAATTACCTGTCGCAGATTATTAA 759 0.4308 MPISRIAIGSPSEFGKADALKAALAEFISMLIFVFAGEGSGMAYNKLTDNGAATPAGLVAASLSHAFALFVAVSVGANISGGHVNPAVTFGAFIGGHITLVRGVLYWIAQLLGSVVACLLLKIATGGLETSAFSLSSGVGATNALVFEIVMTFGLVYTVYATAIDPKNGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWANHWVYWVGPLIGSAIAAVVYEIFFITPGSYEQLPVADY 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02554 252 PANTHER AQUAPORIN-8 6 247 IPR034294 -
Vivi5g02554 252 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g02554 252 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g02554 252 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g02554 252 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g02554 252 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g02554 252 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g02554 252 CDD MIP 26 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g02554 252 FunFam Probable aquaporin TIP1-1 4 252 - -
Vivi5g02554 252 SUPERFAMILY Aquaporin-like 18 241 IPR023271 -
Vivi5g02554 252 Gene3D Glycerol uptake facilitator protein. 4 251 IPR023271 -
Vivi5g02554 252 Pfam Major intrinsic protein 16 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g02554 252 ProSitePatterns MIP family signature. 83 91 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02554 Vivi-Chr5 107748028 107749848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02554 1 252 Major Intrinsic Protein MIP AT2G36830 80.159 4.95e-143 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02554 K09873 - gmx:100777419 463.381