Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02548 ATGAAGAGAGTAAGAAACAATGAAACTAGTGAGGTAGACATGGCTGGTGCTTTCAAGTGCAAGACATGTAGTAAAGAATTCCTTTCATTTCAAGCTCTTGGTGGACATAGGGCTAGCCACAATAAGCTTAAGCTAAATGGCAGAAACCAGAAGAAGGTGCATGTATGTTCTATTTGTGGGCTTCAATTTGCAACTGGACAAGCACTTGGAGGGCACATGAGAAAGCATAGAACAGGTACAGGTCCAGTTCATGATTATGATCAAGATGAGACCATGGCTAATAGTCCTAAAAGATTTCATCTCTTCTTGGATTTGAACTTGACGCCCTATGAGAATGATCTAAAGTTGCTTAACTTCTTCTTTTTTGAGGCATTAAGTACCTTCACTTAA 390 0.3949 MKRVRNNETSEVDMAGAFKCKTCSKEFLSFQALGGHRASHNKLKLNGRNQKKVHVCSICGLQFATGQALGGHMRKHRTGTGPVHDYDQDETMANSPKRFHLFLDLNLTPYENDLKLLNFFFFEALSTFT 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02548 129 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 82 IPR013087 -
Vivi5g02548 129 ProSitePatterns Zinc finger C2H2 type domain signature. 20 40 IPR013087 -
Vivi5g02548 129 SUPERFAMILY beta-beta-alpha zinc fingers 18 76 IPR036236 -
Vivi5g02548 129 Gene3D Classic Zinc Finger 15 76 - -
Vivi5g02548 129 ProSiteProfiles Zinc finger C2H2 type domain profile. 18 45 IPR013087 -
Vivi5g02548 129 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
Vivi5g02548 129 PANTHER ZINC FINGER PROTEIN ZAT5 11 112 - -
Vivi5g02548 129 SMART c2h2final6 54 76 IPR013087 -
Vivi5g02548 129 SMART c2h2final6 18 40 IPR013087 -
Vivi5g02548 129 Pfam C2H2-type zinc finger 53 77 - -
Vivi5g02548 129 Pfam C2H2-type zinc finger 17 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02548 Vivi-Chr5 107551219 107551759 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02548 1 117 C2H2 Transcription Factor Family AT2G37430 45.588 1.52e-27 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi5g02548 zf-C2H2_6 3.6e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02548 - - vvo:131607006 271.552