Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02539 ATGGAACTTCAGTTTCTAGCACTCTCATTCTTCCTTTCATCTCTATTTTGCTACTTACTTTTCCAACAATACTCAAACCGTCACAAAAACCTCCCTCCTTCACCACCTTTCAAACTTCCACTCATTGGCCACATGCATCTCTTAGGTCCTCTCCTCCATCAAACCCTCCACAATTTCTCCCTCAAATATGGCCCATTGATCTCTCTTAACTTCGGTTCCGTCCTTTGCGTCGTTGCTTCCTCCCCTCATTTCGCCAAACAACTCCTCCAAAACAATGAACTATCCTTCAATTCTCGCATCCAAACCACCGCGATCAAACGCCTAACTTACGATTCCTCGCTAGCTTTCGCGCCTTATGGCGATTACTGGAGGTTCATTAAAAAACTTAGCATGAACGAACTCTTAGGCTCTCGTAGCATAAACAACTTCCAACACTTGAGGGCACAGGAAACACAAAGTTTTATGACACTTCTGGCTAACAAAGCCAAAACATCCGAAATCGTGAACATAACCGAGGAATTGTTGAAGTTGACGAACAATGTCATTTCTAAGATGATGTTGGGCGAAGTCGAGGAAGCTAGAGAGGTTGTCCGTGGCGTGACAGAGATCTTCGGAGAGTTTAACGTTTCAGATTTTATCTGGTTGTTTAAGAAAGTTGACTTCCAAGGATTCGGGAAGAGGGTTGAGGATTTGTTTCATAAATTTGATACATTGGTGGAAAGAATTATTTGCAAAAGAGAAGAGACGAGGAAGAAGAACAAAGGAGAGAATTCCAACCGTCAAGCTAGAGATTTTCTTGATATCTTGCTTGATTTTGTTGAAAATCAAAATTCCGACGTGAAAATTCAAAAGGTTCATATCAAGGCCTTGATTATGGATTTCTTCACAGCGGGAACAGACACAACAGCTATATCAACCGAATGGGCGTTAGTCGAACTCATAAAAAATCCATCTATAATGCGACAAGCTCGAGAAGAAATCGACAAGATAGTAGGAAAAAATCGGGAGGTTGAAGAGTCTGACGTTCCGAATCTTCCATATCTCCAAGCAATCATAAAAGAAACCTATCGTCTTCACCCGCCGGTGGCTATGGTTACGAGAAGCTGCGTAACCGAGTGCAAAGTCGAAAACTATGTGATTCCGGAAAACACATTACTCTTTGTTAATGTTTGGTCTATAGGAAGAAATCCAGAAATTTGGAAAAAACCGTTGGAGTTTCGTCCGGAGAGATTCTTGAAAAATGGTGAAGGGGATTCGGTTGATGTTAGGGGGCAGCATTTTCAGCTTCTGCCGTTTGGATCAGGAAGAAGAATGTGTCCTGGTGTTTCATTAGCCATGCAGGAGGTTCCAGCGTTGCTTGGTGCTATTATTCAGTGTTTTGATTTTAAGGTTGTGGATCATGCCAGTGGTGAGATTTTGAATGATGTTGGTGATATTGATGTTGATGAACGGCCAGGATTGACTGCTCCGAGGGCTCGTGATCTTCTGTGTGTTCCTGTTGAAAGGATCAAATTTAAGGCCAATTAA 1527 0.4217 MELQFLALSFFLSSLFCYLLFQQYSNRHKNLPPSPPFKLPLIGHMHLLGPLLHQTLHNFSLKYGPLISLNFGSVLCVVASSPHFAKQLLQNNELSFNSRIQTTAIKRLTYDSSLAFAPYGDYWRFIKKLSMNELLGSRSINNFQHLRAQETQSFMTLLANKAKTSEIVNITEELLKLTNNVISKMMLGEVEEAREVVRGVTEIFGEFNVSDFIWLFKKVDFQGFGKRVEDLFHKFDTLVERIICKREETRKKNKGENSNRQARDFLDILLDFVENQNSDVKIQKVHIKALIMDFFTAGTDTTAISTEWALVELIKNPSIMRQAREEIDKIVGKNREVEESDVPNLPYLQAIIKETYRLHPPVAMVTRSCVTECKVENYVIPENTLLFVNVWSIGRNPEIWKKPLEFRPERFLKNGEGDSVDVRGQHFQLLPFGSGRRMCPGVSLAMQEVPALLGAIIQCFDFKVVDHASGEILNDVGDIDVDERPGLTAPRARDLLCVPVERIKFKAN 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02539 508 CDD CYP93 64 499 - -
Vivi5g02539 508 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 432 441 IPR017972 GO:0005506|GO:0016705
Vivi5g02539 508 Coils Coil 320 340 - -
Vivi5g02539 508 PRINTS P450 superfamily signature 297 314 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi5g02539 508 PRINTS P450 superfamily signature 350 361 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi5g02539 508 PRINTS P450 superfamily signature 430 439 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi5g02539 508 PRINTS P450 superfamily signature 439 450 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi5g02539 508 Gene3D Cytochrome P450 21 495 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi5g02539 508 PANTHER STEROID 21-HYDROXYLASE-RELATED 16 492 - -
Vivi5g02539 508 Pfam Cytochrome P450 33 466 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi5g02539 508 FunFam Cytochrome P450 family protein 23 497 - -
Vivi5g02539 508 PRINTS E-class P450 group I signature 306 332 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi5g02539 508 PRINTS E-class P450 group I signature 439 462 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi5g02539 508 PRINTS E-class P450 group I signature 429 439 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi5g02539 508 PRINTS E-class P450 group I signature 177 195 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi5g02539 508 PRINTS E-class P450 group I signature 60 79 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi5g02539 508 PRINTS E-class P450 group I signature 84 105 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi5g02539 508 PRINTS E-class P450 group I signature 349 367 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi5g02539 508 PRINTS E-class P450 group I signature 389 413 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi5g02539 508 PRINTS E-class P450 group I signature 286 303 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi5g02539 508 SUPERFAMILY Cytochrome P450 32 502 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02539 Vivi-Chr5 107267003 107268861 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02539 1 502 Cytochrome P450 AT5G06900 41.667 3.18e-140 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02539 K23179 - ag:BAA22423 751.125