Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02514 ATGGACTCAACCGAAGACTTACACTTCTTATTAACAGCGCAACGCCGCGAGCTCACGGCGGCGGAAACCATGGAATCCGATCTCGACTTCGCTTTCCATCTCCAGCTACAGGAAGCCCTCGCCGCTTCCCTCACCGATCATCCCTCCTCCTCCATGGACGCTATTCTCGTAGAATCCCCCTCAGACGACGACGTTTTCAAGGCGCCGTCTCTGCAATTGGAAGAGCTCGCGAGAATGGAAATCATGATGAAGGACAGAGAACAGAGCGAGAGAGTAATGCGCGAGGCGAAGTTTGATCTCAGCCGTCTGATTCACGATCAGAAAATGGCGAAGGAGATTCTGAACTTTTCTGAGGAGGATTGGGAGGAATGGGGCGATAATTTCGAGAAACCGTTCGGCGAGGGTAGTTCGAGTTCGTCGGGGTTGAAGAGTGGTAGTAATGTTGATGATGCGGTTGTTAGGGTTTATTTTAAGGGTTTAGTGAGTGAAGAGACTGTGAGAGGTGAGAAGGTTTTGTTGGCTGGGATTGGGGTTGCGGTTTGTGATTTGACTGATAATTTGATATTTGAAGTTTCGAAATCGGTTGTTGGGAATGGGATTAGTAAAATTGCTGTGGAGCTTAAGGCTTTGATTGAAGCTTTCAATGCTGTTATTGCTTTGGATTTGTCGCGTGTTATTTATTTTGGTGATTACTATCCACTTTTCCAATTTTTAAGTGGAAAATGGCCTGCGAAACAGCGGAAGATTGCTATGCTAGTTAATCAGGCGAATCTGCTCCAAAGAAAATTTGAATACTGCAGTCCAAGGCTTGTGGCAAGAAATGATCTGAAGTTTGCATTAAAGCTCGCAAGAGATGCAATTGTTTCTCAGTCCAACAGGCCTGCTGAATCTAGCGGTGTAAAGAGTCTGAATGAAACTTGTGTCATTTGTATGGAGGATACTGATCCTAGTCAATTTTTTTCAGTTGATGACTGTCAACACAGGTATTGCTTTTCTTGCATGAAGCAATATGTGGAGGTGAAGTTGCTTCACGGAATGGTGCCAAAATGCCCTCACGAGGGATGCAAGAATGAACTTCTAATTGACAGTTGCCGGAAATTCTTGACTGCAAAGTTAGTTGAAACCATGCAGCAACGAAAATTGGAAGCTTCAATTCCGCCTACTGAGAAAATCTACTGTCCTTATCCAAGATGCTCTGCATTAATGTCAAAAAAAGAAGTTTTAGATTACTCCCAAAGTCTAATGGGCTCTGAACTATCATTACCCAAGAAATGCGTGAAATGTCATGGTCTTTTCTGTTTCGGCTGCAAGGTCCCTTGGCATAGTGGTATGACATGTTATACTTACAAAAGGTTGAATCCTAATTCTCCAGCAGAAGATGTTAGGTTGAAGTTTCTGGCATCAAGGAGTCTTTGGAGACAGTGTGTGAAGTGTAACCACATGATTGAACTTGCTGAAGGTTGCTACCACATGACTTGCAGATGTAGTTACGAATTTTGCTATAAATGTGGAGCTGAGTGGAAAGACAAAAAGGCAACATGTTCTTGTCCACTTTGGGAAGAGGAAAATATTTGGTTAGAAGATCATCATGACGATGATGAAGAAGACTCTGATTCTGAAGATGATTTTTATTAG 1635 0.4318 MDSTEDLHFLLTAQRRELTAAETMESDLDFAFHLQLQEALAASLTDHPSSSMDAILVESPSDDDVFKAPSLQLEELARMEIMMKDREQSERVMREAKFDLSRLIHDQKMAKEILNFSEEDWEEWGDNFEKPFGEGSSSSSGLKSGSNVDDAVVRVYFKGLVSEETVRGEKVLLAGIGVAVCDLTDNLIFEVSKSVVGNGISKIAVELKALIEAFNAVIALDLSRVIYFGDYYPLFQFLSGKWPAKQRKIAMLVNQANLLQRKFEYCSPRLVARNDLKFALKLARDAIVSQSNRPAESSGVKSLNETCVICMEDTDPSQFFSVDDCQHRYCFSCMKQYVEVKLLHGMVPKCPHEGCKNELLIDSCRKFLTAKLVETMQQRKLEASIPPTEKIYCPYPRCSALMSKKEVLDYSQSLMGSELSLPKKCVKCHGLFCFGCKVPWHSGMTCYTYKRLNPNSPAEDVRLKFLASRSLWRQCVKCNHMIELAEGCYHMTCRCSYEFCYKCGAEWKDKKATCSCPLWEEENIWLEDHHDDDEEDSDSEDDFY 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02514 544 CDD BRcat_RBR_unk 387 446 - -
Vivi5g02514 544 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 301 389 IPR013083 -
Vivi5g02514 544 ProSiteProfiles Zinc finger RING-type profile. 307 351 IPR001841 -
Vivi5g02514 544 SUPERFAMILY RING/U-box 461 523 - -
Vivi5g02514 544 FunFam RBR-type E3 ubiquitin transferase 302 387 - -
Vivi5g02514 544 CDD Rcat_RBR_unk 472 507 - -
Vivi5g02514 544 SMART ibrneu5 459 516 IPR002867 GO:0008270
Vivi5g02514 544 SMART ibrneu5 374 446 IPR002867 GO:0008270
Vivi5g02514 544 FunFam RBR-type E3 ubiquitin transferase 444 543 - -
Vivi5g02514 544 Pfam IBR domain, a half RING-finger domain 465 514 IPR002867 GO:0008270
Vivi5g02514 544 Pfam IBR domain, a half RING-finger domain 376 446 IPR002867 GO:0008270
Vivi5g02514 544 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 256 524 IPR031127 GO:0004842|GO:0016567
Vivi5g02514 544 Gene3D - 153 294 IPR036397 GO:0003676
Vivi5g02514 544 SUPERFAMILY RING/U-box 305 386 - -
Vivi5g02514 544 Gene3D - 444 543 - -
Vivi5g02514 544 ProSiteProfiles TRIAD supradomain profile. 303 526 IPR044066 -
Vivi5g02514 544 FunFam RBR-type E3 ubiquitin transferase 153 290 - -
Vivi5g02514 544 Pfam Reverse transcriptase-like 172 286 IPR002156 GO:0003676|GO:0004523
Vivi5g02514 544 ProSitePatterns Zinc finger RING-type signature. 325 334 IPR017907 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02514 154 505 C3H Transcription Factor Family AT2G19610 33.520 8.74e-64 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02514 - - gmx:100790037 789.645